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dib-lab
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khmer-protocols
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i->file for readability; space req's note
#64
ejbaird
closed
9 years ago
12
punctuation edit and explicit link to EBS howto
#63
ejbaird
closed
10 years ago
6
Update/ami
#62
LSheneman
closed
10 years ago
0
Add missing dependencies for blastkit
#61
luizirber
closed
10 years ago
2
Revise documentation to aid in learning
#60
LSheneman
opened
10 years ago
1
Jinja2 needed for blast server
#59
LSheneman
closed
10 years ago
0
Update/ami
#58
LSheneman
closed
10 years ago
5
Update/ami
#57
LSheneman
closed
10 years ago
1
Update khmer install instructions with pip
#56
ctb
opened
10 years ago
5
Fix install instructions
#55
mr-c
closed
10 years ago
0
Update protocols to use khmer 0.8
#54
ctb
opened
10 years ago
0
Add references to two test data sets
#53
ctb
opened
10 years ago
0
updated version number, made added doc links more explicit
#52
camillescott
closed
10 years ago
0
Update/commandline
#51
LSheneman
closed
10 years ago
6
Data sets to harvest for open marine transcriptome
#50
ctb
opened
10 years ago
2
In screen tutorial, added how to end screen sessions
#49
dmgt
closed
10 years ago
0
install applications using debian packages when available
#48
mr-c
opened
10 years ago
13
Condense software installs into one page
#47
LSheneman
opened
10 years ago
9
Change QC protocol to indicate intermediate step appropriately
#46
ctb
opened
10 years ago
0
Look into LAST instead of BLAST for annotation
#45
ctb
opened
10 years ago
0
switch to pip based khmer installation
#44
mr-c
closed
10 years ago
4
bigcount should be set to false by default on normalize-by-median.
#43
ctb
closed
10 years ago
1
Fix typo in line 99 "ran you" --> "can you"
#42
dmgt
closed
10 years ago
1
switch to using comma-delimited lists of files for input to Trinity
#41
ctb
opened
10 years ago
0
make sequence annotation script look only at IDs, which are stable
#40
ctb
opened
10 years ago
0
Add my graffle diagrams to docs
#39
ctb
opened
10 years ago
0
Update the AMI
#38
ctb
closed
10 years ago
6
Extract CEGMA instructions for @cswelcher or eli
#37
ctb
opened
10 years ago
1
Extract CD-HIT instructions from Likit or Eli
#36
ctb
opened
10 years ago
0
Add instructions for calculating mapping percentage to assembly
#35
ctb
opened
10 years ago
0
Corrected obsolete reference to strip-and-split-for-assembly.py
#34
humberto-ortiz
closed
10 years ago
1
Update Teraterm pro screenshots
#33
ctb
opened
10 years ago
0
move write-trimmomatic into khmer-protocols OR eel-pond
#32
ctb
opened
10 years ago
5
Turn off 'no save on spaces' option in bash
#31
ctb
opened
10 years ago
0
Literate Jenkins
#30
mr-c
closed
10 years ago
10
In mrnaseq rsem numbering, format numbers better
#29
ctb
opened
10 years ago
0
mention threading options for faster scienceing
#28
mr-c
opened
10 years ago
0
file system formatting for ec2 volumes
#27
camillescott
opened
10 years ago
3
took out course specific info
#26
LSheneman
closed
10 years ago
0
Updated to new amazon files, deleted old one, and fixed the link to a random blog again
#25
LSheneman
closed
10 years ago
0
annotate each tutorial segment with the minimum machine size likely to be needed
#24
ctb
opened
10 years ago
0
try out express and sammate
#23
ctb
opened
10 years ago
0
build tools to automatically extract commands into a shell script
#22
ctb
closed
10 years ago
1
put in amazon bootup instructions
#21
ctb
closed
10 years ago
0
Make button to copy code snips.
#20
LSheneman
opened
10 years ago
0
Develop pop-ups for code snips.
#19
LSheneman
closed
10 years ago
1
explain why PE only in RSEM
#18
ctb
opened
11 years ago
2
add scythe into the trimming mix?
#17
ctb
opened
11 years ago
0
add cd-hit instructions for redundancy removal
#16
ctb
opened
11 years ago
1
some FTP servers don't accept mget *
#15
mr-c
opened
11 years ago
3
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