Closed RamRS closed 9 years ago
@mr-c @ctb Does this have anything to do with #68 or #46 ?
@RamRS nope
I am going to try to resolve this issue
I am going to write a test for this case - it seems to be fixed but I'll confirm that and add the test. I'm being coached by @mr-c who is visiting our lab :-)
Working backwards @lexnederbragt and I are unable to reproduce this issue with any version of khmer released during my employment (0.5...1.3)
And I can't find a download for an older version of khmer than v0.5. Seeing as that was released a year and a half after this issue was originally reported I am going to mark this issue as fixed once we have merged Lex's test.
Well, its probably in version control somewhere. And it might (likely) depend on screed. But if it�s fixed it�s fixed :)
@ctb Right-o, I didn't try versions of screed older than v0.7.1
Tested in #979
(thumbs-up)
Cheers, B
On Apr 23, 2015, at 8:40 AM, Michael R. Crusoe notifications@github.com wrote:
Tested in #979 https://github.com/ged-lab/khmer/pull/979 — Reply to this email directly or view it on GitHub https://github.com/ged-lab/khmer/issues/175#issuecomment-95573032.
Bob Freeman, Ph.D. Research Computing Facilitator XSEDE Campus Champion FAS Research Computing Harvard University 38 Oxford Street, Rm 117 Cambridge, MA 02138
617/495.8824, vox
@DevBioInfoGuy About: http://bit.ly/1m8n0se
Transferring ctb#11 opened on 08-May-2012
I got this error trying to follow the partitioning instructions:
It looks like the code that created the partition-labelled fasta did not account for descriptions in the fasta header. Because the first line in my partition file looks like this:
But the extract-partitions script is trying to parse the partition number out of the name.
I made this change to fix the problem: