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dib-lab / khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
http://khmer.readthedocs.io/
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Screed DeprecationWarning (Python 3.9) #1903

Closed jvivian-atreca closed 4 years ago

jvivian-atreca commented 4 years ago

Hi, thanks for the great parsing tool.

Just wanted to give a heads up about a DeprecationWarning:

screed/screedRecord.py:12: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
luizirber commented 4 years ago

Thanks @jvivian-atreca! It should have been fixed in https://github.com/dib-lab/screed/pull/80, I'll check again what's going on

luizirber commented 4 years ago

OK, fixed in https://github.com/dib-lab/screed/pull/82. I'm going to release 1.0.2 with the fix.

luizirber commented 4 years ago

1.0.2 (and 1.0.3, same code but fixes the PyPI formatting...) released. Should be in bioconda soon.