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dib-lab / khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
http://khmer.readthedocs.io/
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multithread data structure initialization #977

Open mr-c opened 9 years ago

mr-c commented 9 years ago

https://github.com/ged-lab/khmer/blob/master/lib/hashbits.hh#L29

ctb commented 9 years ago

On Tue, Apr 21, 2015 at 05:07:44AM -0700, Michael R. Crusoe wrote:

https://github.com/ged-lab/khmer/blob/master/lib/hashbits.hh#L29

what about it? :)

mr-c commented 9 years ago

Embarrassingly slow. Could easily be sped up with openmp.