dib-lab / sourmash-slainte

Project template for sourmash-based characterization of genomes and metagenomes
BSD 3-Clause "New" or "Revised" License
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support simplified samples.csv / prefix usage #11

Open ctb opened 8 months ago

ctb commented 8 months ago

in practice a lot of samples stuff seems to be "use this prefix, find paired end files, sketch".

could just write a script or set of scripts to generate samples.csv for different situations, actually...

so an alternative could be: samples.csv gets more complicated, but is easier to autogenerate?