dicompyler / dicompyler-core

A library of core radiation therapy modules for DICOM RT used by dicompyler
https://dicompyler-core.readthedocs.io
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Scheduled weekly dependency update for week 20 #291

Closed pyup-bot closed 2 years ago

pyup-bot commented 2 years ago

Update wheel from 0.37.0 to 0.37.1.

Changelog ### 0.37.1 ``` - Fixed ``wheel pack`` duplicating the ``WHEEL`` contents when the build number has changed (415) - Fixed parsing of file names containing commas in ``RECORD`` (PR by Hood Chatham) ```
Links - PyPI: https://pypi.org/project/wheel - Changelog: https://pyup.io/changelogs/wheel/ - Repo: https://github.com/pypa/wheel

Update flake8 from 3.9.2 to 4.0.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/flake8 - Changelog: https://pyup.io/changelogs/flake8/ - Repo: https://github.com/pycqa/flake8

Update tox from 3.24.4 to 3.25.0.

Changelog ### 3.25.0 ``` -------------------- Bugfixes ^^^^^^^^ - Fixed failing isolated_build because setuptools warning was captured in ``build_requires``. -- by :user:`zariiii9003` `2332 <https://github.com/tox-dev/tox/issues/2332>`_ - Avoid potential 30s delay caused by socket.getfqdn(). -- by :user:`ssbarnea` `2375 <https://github.com/tox-dev/tox/issues/2375>`_ Features ^^^^^^^^ - Ignore missing commands if they are prefixed by ``-`` -- by :user:`cdown`. `2315 <https://github.com/tox-dev/tox/issues/2315>`_ - Add default environment variables (such as http_proxy) regardless of their case to passenv on UNIX -- by :user:`poggenhans`. `2372 <https://github.com/tox-dev/tox/issues/2372>`_ - On Windows ``PROGRAMFILES``, ``PROGRAMFILES(X86)``, and ``PROGRAMDATA`` environment variables are now passed through, unmasking system values necessary to locate resources such as a C compiler. `2382 <https://github.com/tox-dev/tox/issues/2382>`_ Documentation ^^^^^^^^^^^^^ - Deleted the tox mailing list -- by :user:`jugmac00` `2364 <https://github.com/tox-dev/tox/issues/2364>`_ ``` ### 3.24.5 ``` -------------------- Bugfixes ^^^^^^^^ - Fixed an issue where ``usedevelop`` would cause an invocation error if setup.py does not exist. -- by :user:`VincentVanlaer` `2197 <https://github.com/tox-dev/tox/issues/2197>`_ ```
Links - PyPI: https://pypi.org/project/tox - Changelog: https://pyup.io/changelogs/tox/ - Docs: https://tox.readthedocs.io

Update coverage from 6.0 to 6.3.3.

Changelog ### 6.3.3 ``` -------------------------- - Fix: Coverage.py now builds successfully on CPython 3.11 (3.11.0b1) again. Closes `issue 1367`_. Some results for generators may have changed. .. _issue 1367: https://github.com/nedbat/coveragepy/issues/1367 .. _changes_632: ``` ### 6.3.2 ``` -------------------------- - Fix: adapt to pypy3.9's decorator tracing behavior. It now traces function decorators like CPython 3.8: both the -line and the def-line are traced. Fixes `issue 1326`_. - Debug: added ``pybehave`` to the list of :ref:`cmd_debug` and :ref:`cmd_run_debug` options. - Fix: show an intelligible error message if ``--concurrency=multiprocessing`` is used without a configuration file. Closes `issue 1320`_. .. _issue 1320: https://github.com/nedbat/coveragepy/issues/1320 .. _issue 1326: https://github.com/nedbat/coveragepy/issues/1326 .. _changes_631: ``` ### 6.3.1 ``` -------------------------- - Fix: deadlocks could occur when terminating processes. Some of these deadlocks (described in `issue 1310`_) are now fixed. - Fix: a signal handler was being set from multiple threads, causing an error: "ValueError: signal only works in main thread". This is now fixed, closing `issue 1312`_. - Fix: ``--precision`` on the command-line was being ignored while considering ``--fail-under``. This is now fixed, thanks to `Marcelo Trylesinski <pull 1317_>`_. - Fix: releases no longer provide 3.11.0-alpha wheels. Coverage.py uses CPython internal fields which are moving during the alpha phase. Fixes `issue 1316`_. .. _issue 1310: https://github.com/nedbat/coveragepy/issues/1310 .. _issue 1312: https://github.com/nedbat/coveragepy/issues/1312 .. _issue 1316: https://github.com/nedbat/coveragepy/issues/1316 .. _pull 1317: https://github.com/nedbat/coveragepy/pull/1317 .. _changes_63: ``` ### 6.3 ``` ------------------------ - Feature: Added the ``lcov`` command to generate reports in LCOV format. Thanks, `Bradley Burns <pull 1289_>`_. Closes issues `587 <issue 587_>`_ and `626 <issue 626_>`_. - Feature: the coverage data file can now be specified on the command line with the ``--data-file`` option in any command that reads or writes data. This is in addition to the existing ``COVERAGE_FILE`` environment variable. Closes `issue 624`_. Thanks, `Nikita Bloshchanevich <pull 1304_>`_. - Feature: coverage measurement data will now be written when a SIGTERM signal is received by the process. This includes :meth:`Process.terminate <python:multiprocessing.Process.terminate>`, and other ways to terminate a process. Currently this is only on Linux and Mac; Windows is not supported. Fixes `issue 1307`_. - Dropped support for Python 3.6, which reached end-of-life on 2021-12-23. - Updated Python 3.11 support to 3.11.0a4, fixing `issue 1294`_. - Fix: the coverage data file is now created in a more robust way, to avoid problems when multiple processes are trying to write data at once. Fixes issues `1303 <issue 1303_>`_ and `883 <issue 883_>`_. - Fix: a .gitignore file will only be written into the HTML report output directory if the directory is empty. This should prevent certain unfortunate accidents of writing the file where it is not wanted. - Releases now have MacOS arm64 wheels for Apple Silicon, fixing `issue 1288`_. .. _issue 587: https://github.com/nedbat/coveragepy/issues/587 .. _issue 624: https://github.com/nedbat/coveragepy/issues/624 .. _issue 626: https://github.com/nedbat/coveragepy/issues/626 .. _issue 883: https://github.com/nedbat/coveragepy/issues/883 .. _issue 1288: https://github.com/nedbat/coveragepy/issues/1288 .. _issue 1294: https://github.com/nedbat/coveragepy/issues/1294 .. _issue 1303: https://github.com/nedbat/coveragepy/issues/1303 .. _issue 1307: https://github.com/nedbat/coveragepy/issues/1307 .. _pull 1289: https://github.com/nedbat/coveragepy/pull/1289 .. _pull 1304: https://github.com/nedbat/coveragepy/pull/1304 .. _changes_62: ``` ### 6.2 ``` ------------------------ - Feature: Now the ``--concurrency`` setting can now have a list of values, so that threads and another lightweight threading package can be measured together, such as ``--concurrency=gevent,thread``. Closes `issue 1012`_ and `issue 1082`_. - Fix: A module specified as the ``source`` setting is imported during startup, before the user program imports it. This could cause problems if the rest of the program isn't ready yet. For example, `issue 1203`_ describes a Django setting that is accessed before settings have been configured. Now the early import is wrapped in a try/except so errors then don't stop execution. - Fix: A colon in a decorator expression would cause an exclusion to end too early, preventing the exclusion of the decorated function. This is now fixed. - Fix: The HTML report now will not overwrite a .gitignore file that already exists in the HTML output directory (follow-on for `issue 1244`_). - API: The exceptions raised by Coverage.py have been specialized, to provide finer-grained catching of exceptions by third-party code. - API: Using ``suffix=False`` when constructing a Coverage object with multiprocessing wouldn't suppress the data file suffix (`issue 989`_). This is now fixed. - Debug: The ``coverage debug data`` command will now sniff out combinable data files, and report on all of them. - Debug: The ``coverage debug`` command used to accept a number of topics at a time, and show all of them, though this was never documented. This no longer works, to allow for command-line options in the future. .. _issue 989: https://github.com/nedbat/coveragepy/issues/989 .. _issue 1012: https://github.com/nedbat/coveragepy/issues/1012 .. _issue 1082: https://github.com/nedbat/coveragepy/issues/1082 .. _issue 1203: https://github.com/nedbat/coveragepy/issues/1203 .. _changes_612: ``` ### 6.1.2 ``` -------------------------- - Python 3.11 is supported (tested with 3.11.0a2). One still-open issue has to do with `exits through with-statements <issue 1270_>`_. - Fix: When remapping file paths through the ``[paths]`` setting while combining, the ``[run] relative_files`` setting was ignored, resulting in absolute paths for remapped file names (`issue 1147`_). This is now fixed. - Fix: Complex conditionals over excluded lines could have incorrectly reported a missing branch (`issue 1271`_). This is now fixed. - Fix: More exceptions are now handled when trying to parse source files for reporting. Problems that used to terminate coverage.py can now be handled with ``[report] ignore_errors``. This helps with plugins failing to read files (`django_coverage_plugin issue 78`_). - Fix: Removed another vestige of jQuery from the source tarball (`issue 840`_). - Fix: Added a default value for a new-to-6.x argument of an internal class. This unsupported class is being used by coveralls (`issue 1273`_). Although I'd rather not "fix" unsupported interfaces, it's actually nicer with a default value. .. _django_coverage_plugin issue 78: https://github.com/nedbat/django_coverage_plugin/issues/78 .. _issue 1147: https://github.com/nedbat/coveragepy/issues/1147 .. _issue 1270: https://github.com/nedbat/coveragepy/issues/1270 .. _issue 1271: https://github.com/nedbat/coveragepy/issues/1271 .. _issue 1273: https://github.com/nedbat/coveragepy/issues/1273 .. _changes_611: ``` ### 6.1.1 ``` -------------------------- - Fix: The sticky header on the HTML report didn't work unless you had branch coverage enabled. This is now fixed: the sticky header works for everyone. (Do people still use coverage without branch measurement!? j/k) - Fix: When using explicitly declared namespace packages, the "already imported a file that will be measured" warning would be issued (`issue 888`_). This is now fixed. .. _issue 888: https://github.com/nedbat/coveragepy/issues/888 .. _changes_61: ``` ### 6.1 ``` ------------------------ - Deprecated: The ``annotate`` command and the ``Coverage.annotate`` function will be removed in a future version, unless people let me know that they are using it. Instead, the ``html`` command gives better-looking (and more accurate) output, and the ``report -m`` command will tell you line numbers of missing lines. Please get in touch if you have a reason to use ``annotate`` over those better options: nednedbatchelder.com. - Feature: Coverage now sets an environment variable, ``COVERAGE_RUN`` when running your code with the ``coverage run`` command. The value is not important, and may change in the future. Closes `issue 553`_. - Feature: The HTML report pages for Python source files now have a sticky header so the file name and controls are always visible. - Feature: The ``xml`` and ``json`` commands now describe what they wrote where. - Feature: The ``html``, ``combine``, ``xml``, and ``json`` commands all accept a ``-q/--quiet`` option to suppress the messages they write to stdout about what they are doing (`issue 1254`_). - Feature: The ``html`` command writes a ``.gitignore`` file into the HTML output directory, to prevent the report from being committed to git. If you want to commit it, you will need to delete that file. Closes `issue 1244`_. - Feature: Added support for PyPy 3.8. - Fix: More generated code is now excluded from measurement. Code such as `attrs`_ boilerplate, or doctest code, was being measured though the synthetic line numbers meant they were never reported. Once Cython was involved though, the generated .so files were parsed as Python, raising syntax errors, as reported in `issue 1160`_. This is now fixed. - Fix: When sorting human-readable names, numeric components are sorted correctly: file10.py will appear after file9.py. This applies to file names, module names, environment variables, and test contexts. - Performance: Branch coverage measurement is faster, though you might only notice on code that is executed many times, such as long-running loops. - Build: jQuery is no longer used or vendored (`issue 840`_ and `issue 1118`_). Huge thanks to Nils Kattenbeck (septatrix) for the conversion to vanilla JavaScript in `pull request 1248`_. .. _issue 553: https://github.com/nedbat/coveragepy/issues/553 .. _issue 840: https://github.com/nedbat/coveragepy/issues/840 .. _issue 1118: https://github.com/nedbat/coveragepy/issues/1118 .. _issue 1160: https://github.com/nedbat/coveragepy/issues/1160 .. _issue 1244: https://github.com/nedbat/coveragepy/issues/1244 .. _pull request 1248: https://github.com/nedbat/coveragepy/pull/1248 .. _issue 1254: https://github.com/nedbat/coveragepy/issues/1254 .. _attrs: https://www.attrs.org/ .. _changes_602: ``` ### 6.0.2 ``` -------------------------- - Namespace packages being measured weren't properly handled by the new code that ignores third-party packages. If the namespace package was installed, it was ignored as a third-party package. That problem (`issue 1231`_) is now fixed. - Packages named as "source packages" (with ``source``, or ``source_pkgs``, or pytest-cov's ``--cov``) might have been only partially measured. Their top-level statements could be marked as unexecuted, because they were imported by coverage.py before measurement began (`issue 1232`_). This is now fixed, but the package will be imported twice, once by coverage.py, then again by your test suite. This could cause problems if importing the package has side effects. - The :meth:`.CoverageData.contexts_by_lineno` method was documented to return a dict, but was returning a defaultdict. Now it returns a plain dict. It also no longer returns negative numbered keys. .. _issue 1231: https://github.com/nedbat/coveragepy/issues/1231 .. _issue 1232: https://github.com/nedbat/coveragepy/issues/1232 .. _changes_601: ``` ### 6.0.1 ``` -------------------------- - In 6.0, the coverage.py exceptions moved from coverage.misc to coverage.exceptions. These exceptions are not part of the public supported API, CoverageException is. But a number of other third-party packages were importing the exceptions from coverage.misc, so they are now available from there again (`issue 1226`_). - Changed an internal detail of how tomli is imported, so that tomli can use coverage.py for their own test suite (`issue 1228`_). - Defend against an obscure possibility under code obfuscation, where a function can have an argument called "self", but no local named "self" (`pull request 1210`_). Thanks, Ben Carlsson. .. _pull request 1210: https://github.com/nedbat/coveragepy/pull/1210 .. _issue 1226: https://github.com/nedbat/coveragepy/issues/1226 .. _issue 1228: https://github.com/nedbat/coveragepy/issues/1228 .. _changes_60: ```
Links - PyPI: https://pypi.org/project/coverage - Changelog: https://pyup.io/changelogs/coverage/ - Repo: https://github.com/nedbat/coveragepy

Update Sphinx from 4.2.0 to 4.5.0.

Changelog ### 4.5.0 ``` ===================================== Incompatible changes -------------------- * 10112: extlinks: Disable hardcoded links detector by default * 9993, 10177: std domain: Disallow to refer an inline target via :rst:role:`ref` role Deprecated ---------- * ``sphinx.ext.napoleon.docstring.GoogleDocstring._qualify_name()`` Features added -------------- * 10260: Enable ``FORCE_COLOR`` and ``NO_COLOR`` for terminal colouring * 10234: autosummary: Add "autosummary" CSS class to summary tables * 10125: extlinks: Improve suggestion message for a reference having title * 10112: extlinks: Add :confval:`extlinks_detect_hardcoded_links` to enable hardcoded links detector feature * 9494, 9456: html search: Add a config variable :confval:`html_show_search_summary` to enable/disable the search summaries * 9337: HTML theme, add option ``enable_search_shortcuts`` that enables :kbd:`/` as a Quick search shortcut and :kbd:`Esc` shortcut that removes search highlighting. * 10107: i18n: Allow to suppress translation warnings by adding ``noqa`` comment to the tail of each translation message * 10252: C++, support attributes on classes, unions, and enums. * 10253: :rst:dir:`pep` role now generates URLs based on peps.python.org Bugs fixed ---------- * 9876: autodoc: Failed to document an imported class that is built from native binary module * 10133: autodoc: Crashed when mocked module is used for type annotation * 10146: autodoc: :confval:`autodoc_default_options` does not support ``no-value`` option * 9971: autodoc: TypeError is raised when the target object is annotated by unhashable object * 10205: extlinks: Failed to compile regexp on checking hardcoded links * 10277: html search: Could not search short words (ex. "use") * 9529: LaTeX: named auto numbered footnote (ex. ``[named]``) that is referred multiple times was rendered to a question mark * 9924: LaTeX: multi-line :rst:dir:`cpp:function` directive has big vertical spacing in Latexpdf * 10158: LaTeX: excessive whitespace since v4.4.0 for undocumented variables/structure members * 10175: LaTeX: named footnote reference is linked to an incorrect footnote if the name is also used in the different document * 10269: manpage: Failed to resolve the title of :ref: cross references * 10179: i18n: suppress "rST localization" warning * 10118: imgconverter: Unnecessary availablity check is called for remote URIs * 10181: napoleon: attributes are displayed like class attributes for google style docstrings when :confval:`napoleon_use_ivar` is enabled * 10122: sphinx-build: make.bat does not check the installation of sphinx-build command before showing help ``` ### 4.4.0 ``` ===================================== Dependencies ------------ * 10007: Use ``importlib_metadata`` for python-3.9 or older * 10007: Drop ``setuptools`` Features added -------------- * 9075: autodoc: Add a config variable :confval:`autodoc_typehints_format` to suppress the leading module names of typehints of function signatures (ex. ``io.StringIO`` -> ``StringIO``) * 9831: Autosummary now documents only the members specified in a module's ``__all__`` attribute if :confval:`autosummary_ignore_module_all` is set to ``False``. The default behaviour is unchanged. Autogen also now supports this behavior with the ``--respect-module-all`` switch. * 9555: autosummary: Improve error messages on failure to load target object * 9800: extlinks: Emit warning if a hardcoded link is replaceable by an extlink, suggesting a replacement. * 9961: html: Support nested <kbd> HTML elements in other HTML builders * 10013: html: Allow to change the loading method of JS via ``loading_method`` parameter for :meth:`Sphinx.add_js_file()` * 9551: html search: "Hide Search Matches" link removes "highlight" parameter from URL * 9815: html theme: Wrap sidebar components in div to allow customizing their layout via CSS * 9827: i18n: Sort items in glossary by translated terms * 9899: py domain: Allows to specify cross-reference specifier (``.`` and ``~``) as ``:type:`` option * 9894: linkcheck: add option ``linkcheck_exclude_documents`` to disable link checking in matched documents. * 9793: sphinx-build: Allow to use the parallel build feature in macOS on macOS and Python3.8+ * 10055: sphinx-build: Create directories when ``-w`` option given * 9993: std domain: Allow to refer an inline target (ex. ``_`target name) via :rst:role:`ref` role * 9981: std domain: Strip value part of the option directive from general index * 9391: texinfo: improve variable in ``samp`` role * 9578: texinfo: Add :confval:`texinfo_cross_references` to disable cross references for readability with standalone readers * 9822 (and 9062), add new Intersphinx role :rst:role:`external` for explict lookup in the external projects, without resolving to the local project. Bugs fixed ---------- * 9866: autodoc: doccomment for the imported class was ignored * 9883: autodoc: doccomment for the alias to mocked object was ignored * 9908: autodoc: debug message is shown on building document using NewTypes with Python 3.10 * 9968: autodoc: instance variables are not shown if __init__ method has position-only-arguments * 9194: autodoc: types under the "typing" module are not hyperlinked * 10009: autodoc: Crashes if target object raises an error on getting docstring * 10058: autosummary: Imported members are not shown when ``autodoc_class_signature = 'separated'`` * 9947: i18n: topic directive having a bullet list can't be translatable * 9878: mathjax: MathJax configuration is placed after loading MathJax itself * 9932: napoleon: empty "returns" section is generated even if no description * 9857: Generated RFC links use outdated base url * 9909: HTML, prevent line-wrapping in literal text. * 10061: html theme: Configuration values added by themes are not be able to override from conf.py * 10073: imgconverter: Unnecessary availablity check is called for "data" URIs * 9925: LaTeX: prohibit also with ``'xelatex'`` line splitting at dashes of inline and parsed literals * 9944: LaTeX: extra vertical whitespace for some nested declarations * 9940: LaTeX: Multi-function declaration in Python domain has cramped vertical spacing in latexpdf output * 10015: py domain: types under the "typing" module are not hyperlinked defined at info-field-list * 9390: texinfo: Do not emit labels inside footnotes * 9413: xml: Invalid XML was generated when cross referencing python objects * 9979: Error level messages were displayed as warning messages * 10057: Failed to scan documents if the project is placed onto the root directory * 9636: code-block: ``:dedent:`` without argument did strip newlines ``` ### 4.3.2 ``` ===================================== Bugs fixed ---------- * 9917: C and C++, parse fundamental types no matter the order of simple type specifiers. ``` ### 4.3.1 ``` ===================================== Features added -------------- * 9864: mathjax: Support chnaging the loading method of MathJax to "defer" via :confval:`mathjax_options` Bugs fixed ---------- * 9838: autodoc: AttributeError is raised on building document for functions decorated by functools.lru_cache * 9879: autodoc: AttributeError is raised on building document for an object having invalid __doc__ attribute * 9844: autodoc: Failed to process a function wrapped with functools.partial if :confval:`autodoc_preserve_defaults` enabled * 9872: html: Class namespace collision between autodoc signatures and docutils-0.17 * 9868: imgmath: Crashed if the dvisvgm command failed to convert equation * 9864: mathjax: Failed to render equations via MathJax v2. The loading method of MathJax is back to "async" method again ``` ### 4.3.0 ``` ===================================== Dependencies ------------ * Support Python 3.10 Incompatible changes -------------------- * 9649: ``searchindex.js``: the embedded data has changed format to allow objects with the same name in different domains. * 9672: The rendering of Python domain declarations is implemented with more docutils nodes to allow better CSS styling. It may break existing styling. * 9672: the signature of :py:meth:`domains.py.PyObject.get_signature_prefix` has changed to return a list of nodes instead of a plain string. * 9695: ``domains.js.JSObject.display_prefix`` has been changed into a method ``get_display_prefix`` which now returns a list of nodes instead of a plain string. * 9695: The rendering of Javascript domain declarations is implemented with more docutils nodes to allow better CSS styling. It may break existing styling. * 9450: mathjax: Load MathJax via "defer" strategy Deprecated ---------- * ``sphinx.ext.autodoc.AttributeDocumenter._datadescriptor`` * ``sphinx.writers.html.HTMLTranslator._fieldlist_row_index`` * ``sphinx.writers.html.HTMLTranslator._table_row_index`` * ``sphinx.writers.html5.HTML5Translator._fieldlist_row_index`` * ``sphinx.writers.html5.HTML5Translator._table_row_index`` Features added -------------- * 9639: autodoc: Support asynchronous generator functions * 9664: autodoc: ``autodoc-process-bases`` supports to inject reST snippet as a base class * 9691: C, added new info-field ``retval`` for :rst:dir:`c:function` and :rst:dir:`c:macro`. * C++, added new info-field ``retval`` for :rst:dir:`cpp:function`. * 9618: i18n: Add :confval:`gettext_allow_fuzzy_translations` to allow "fuzzy" messages for translation * 9672: More CSS classes on Python domain descriptions * 9695: More CSS classes on Javascript domain descriptions * 9683: Revert the removal of ``add_stylesheet()`` API. It will be kept until the Sphinx-6.0 release * 2068, add :confval:`intersphinx_disabled_reftypes` for disabling interphinx resolution of cross-references that do not have an explicit inventory specification. Specific types of cross-references can be disabled, e.g., ``std:doc`` or all cross-references in a specific domain, e.g., ``std:*``. * 9623: Allow to suppress "toctree contains reference to excluded document" warnings using :confval:`suppress_warnings` Bugs fixed ---------- * 9630: autodoc: Failed to build cross references if :confval:`primary_domain` is not 'py' * 9644: autodoc: Crashed on getting source info from problematic object * 9655: autodoc: mocked object having doc comment is warned unexpectedly * 9651: autodoc: return type field is not generated even if :confval:`autodoc_typehints_description_target` is set to "documented" when its info-field-list contains ``:returns:`` field * 9657: autodoc: The base class for a subclass of mocked object is incorrect * 9607: autodoc: Incorrect base class detection for the subclasses of the generic class * 9755: autodoc: memory addresses are shown for aliases * 9752: autodoc: Failed to detect type annotation for slots attribute * 9756: autodoc: Crashed if classmethod does not have __func__ attribute * 9757: autodoc: :confval:`autodoc_inherit_docstrings` does not effect to overridden classmethods * 9781: autodoc: :confval:`autodoc_preserve_defaults` does not support hexadecimal numeric * 9630: autosummary: Failed to build summary table if :confval:`primary_domain` is not 'py' * 9670: html: Fix download file with special characters * 9710: html: Wrong styles for even/odd rows in nested tables * 9763: html: parameter name and its type annotation are not separated in HTML * 9649: HTML search: when objects have the same name but in different domains, return all of them as result instead of just one. * 7634: intersphinx: references on the file in sub directory are broken * 9737: LaTeX: hlist is rendered as a list containing "aggedright" text * 9678: linkcheck: file extension was shown twice in warnings * 9697: py domain: An index entry with parens was registered for ``py:method`` directive with ``:property:`` option * 9775: py domain: Literal typehint was converted to a cross reference when :confval:`autodoc_typehints='description'` * 9708: needs_extension failed to check double-digit version correctly * 9688: Fix :rst:dir:`code`` does not recognize ``:class:`` option * 9733: Fix for logging handler flushing warnings in the middle of the docs build * 9656: Fix warnings without subtype being incorrectly suppressed * Intersphinx, for unresolved references with an explicit inventory, e.g., ``proj:myFunc``, leave the inventory prefix in the unresolved text. ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/ - Homepage: https://www.sphinx-doc.org/

Update cryptography from 35.0.0 to 37.0.2.

Changelog ### 37.0.2 ``` ~~~~~~~~~~~~~~~~~~~ * Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 3.0.3. * Added a constant needed for an upcoming pyOpenSSL release. .. _v37-0-1: ``` ### 37.0.1 ``` ~~~~~~~~~~~~~~~~~~~ * Fixed an issue where parsing an encrypted private key with the public loader functions would hang waiting for console input on OpenSSL 3.0.x rather than raising an error. * Restored some legacy symbols for older ``pyOpenSSL`` users. These will be removed again in the future, so ``pyOpenSSL`` users should still upgrade to the latest version of that package when they upgrade ``cryptography``. .. _v37-0-0: ``` ### 37.0.0 ``` ~~~~~~~~~~~~~~~~~~~ * Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 3.0.2. * **BACKWARDS INCOMPATIBLE:** Dropped support for LibreSSL 2.9.x and 3.0.x. The new minimum LibreSSL version is 3.1+. * **BACKWARDS INCOMPATIBLE:** Removed ``signer`` and ``verifier`` methods from the public key and private key classes. These methods were originally deprecated in version 2.0, but had an extended deprecation timeline due to usage. Any remaining users should transition to ``sign`` and ``verify``. * Deprecated OpenSSL 1.1.0 support. OpenSSL 1.1.0 is no longer supported by the OpenSSL project. The next release of ``cryptography`` will be the last to support compiling with OpenSSL 1.1.0. * Deprecated Python 3.6 support. Python 3.6 is no longer supported by the Python core team. Support for Python 3.6 will be removed in a future ``cryptography`` release. * Deprecated the current minimum supported Rust version (MSRV) of 1.41.0. In the next release we will raise MSRV to 1.48.0. Users with the latest ``pip`` will typically get a wheel and not need Rust installed, but check :doc:`/installation` for documentation on installing a newer ``rustc`` if required. * Deprecated :class:`~cryptography.hazmat.primitives.ciphers.algorithms.CAST5`, :class:`~cryptography.hazmat.primitives.ciphers.algorithms.SEED`, :class:`~cryptography.hazmat.primitives.ciphers.algorithms.IDEA`, and :class:`~cryptography.hazmat.primitives.ciphers.algorithms.Blowfish` because they are legacy algorithms with extremely low usage. These will be removed in a future version of ``cryptography``. * Added limited support for distinguished names containing a bit string. * We now ship ``universal2`` wheels on macOS, which contain both ``arm64`` and ``x86_64`` architectures. Users on macOS should upgrade to the latest ``pip`` to ensure they can use this wheel, although we will continue to ship ``x86_64`` specific wheels for now to ease the transition. * This will be the final release for which we ship ``manylinux2010`` wheels. Going forward the minimum supported ``manylinux`` ABI for our wheels will be ``manylinux2014``. The vast majority of users will continue to receive ``manylinux`` wheels provided they have an up to date ``pip``. For PyPy wheels this release already requires ``manylinux2014`` for compatibility with binaries distributed by upstream. * Added support for multiple :class:`~cryptography.x509.ocsp.OCSPSingleResponse` in a :class:`~cryptography.x509.ocsp.OCSPResponse`. * Restored support for signing certificates and other structures in :doc:`/x509/index` with SHA3 hash algorithms. * :class:`~cryptography.hazmat.primitives.ciphers.algorithms.TripleDES` is disabled in FIPS mode. * Added support for serialization of PKCS12 CA friendly names/aliases in :func:`~cryptography.hazmat.primitives.serialization.pkcs12.serialize_key_and_certificates` * Added support for 12-15 byte (96 to 120 bit) nonces to :class:`~cryptography.hazmat.primitives.ciphers.aead.AESOCB3`. This class previously supported only 12 byte (96 bit). * Added support for :class:`~cryptography.hazmat.primitives.ciphers.aead.AESSIV` when using OpenSSL 3.0.0+. * Added support for serializing PKCS7 structures from a list of certificates with :class:`~cryptography.hazmat.primitives.serialization.pkcs7.serialize_certificates`. * Added support for parsing :rfc:`4514` strings with :meth:`~cryptography.x509.Name.from_rfc4514_string`. * Added :attr:`~cryptography.hazmat.primitives.asymmetric.padding.PSS.AUTO` to :class:`~cryptography.hazmat.primitives.asymmetric.padding.PSS`. This can be used to verify a signature where the salt length is not already known. * Added :attr:`~cryptography.hazmat.primitives.asymmetric.padding.PSS.DIGEST_LENGTH` to :class:`~cryptography.hazmat.primitives.asymmetric.padding.PSS`. This constant will set the salt length to the same length as the ``PSS`` hash algorithm. * Added support for loading RSA-PSS key types with :func:`~cryptography.hazmat.primitives.serialization.load_pem_private_key` and :func:`~cryptography.hazmat.primitives.serialization.load_der_private_key`. This functionality is limited to OpenSSL 1.1.1e+ and loads the key as a normal RSA private key, discarding the PSS constraint information. .. _v36-0-2: ``` ### 36.0.2 ``` ~~~~~~~~~~~~~~~~~~~ * Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 1.1.1n. .. _v36-0-1: ``` ### 36.0.1 ``` ~~~~~~~~~~~~~~~~~~~ * Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 1.1.1m. .. _v36-0-0: ``` ### 36.0.0 ``` ~~~~~~~~~~~~~~~~~~~ * **FINAL DEPRECATION** Support for ``verifier`` and ``signer`` on our asymmetric key classes was deprecated in version 2.0. These functions had an extended deprecation due to usage, however the next version of ``cryptography`` will drop support. Users should migrate to ``sign`` and ``verify``. * The entire :doc:`/x509/index` layer is now written in Rust. This allows alternate asymmetric key implementations that can support cloud key management services or hardware security modules provided they implement the necessary interface (for example: :class:`~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey`). * :ref:`Deprecated the backend argument<faq-missing-backend>` for all functions. * Added support for :class:`~cryptography.hazmat.primitives.ciphers.aead.AESOCB3`. * Added support for iterating over arbitrary request :attr:`~cryptography.x509.CertificateSigningRequest.attributes`. * Deprecated the ``get_attribute_for_oid`` method on :class:`~cryptography.x509.CertificateSigningRequest` in favor of :meth:`~cryptography.x509.Attributes.get_attribute_for_oid` on the new :class:`~cryptography.x509.Attributes` object. * Fixed handling of PEM files to allow loading when certificate and key are in the same file. * Fixed parsing of :class:`~cryptography.x509.CertificatePolicies` extensions containing legacy ``BMPString`` values in their ``explicitText``. * Allow parsing of negative serial numbers in certificates. Negative serial numbers are prohibited by :rfc:`5280` so a deprecation warning will be raised whenever they are encountered. A future version of ``cryptography`` will drop support for parsing them. * Added support for parsing PKCS12 files with friendly names for all certificates with :func:`~cryptography.hazmat.primitives.serialization.pkcs12.load_pkcs12`, which will return an object of type :class:`~cryptography.hazmat.primitives.serialization.pkcs12.PKCS12KeyAndCertificates`. * :meth:`~cryptography.x509.Name.rfc4514_string` and related methods now have an optional ``attr_name_overrides`` parameter to supply custom OID to name mappings, which can be used to match vendor-specific extensions. * **BACKWARDS INCOMPATIBLE:** Reverted the nonstandard formatting of email address fields as ``E`` in :meth:`~cryptography.x509.Name.rfc4514_string` methods from version 35.0. The previous behavior can be restored with: ``name.rfc4514_string({NameOID.EMAIL_ADDRESS: "E"})`` * Allow :class:`~cryptography.hazmat.primitives.asymmetric.x25519.X25519PublicKey` and :class:`~cryptography.hazmat.primitives.asymmetric.x448.X448PublicKey` to be used as public keys when parsing certificates or creating them with :class:`~cryptography.x509.CertificateBuilder`. These key types must be signed with a different signing algorithm as ``X25519`` and ``X448`` do not support signing. * Extension values can now be serialized to a DER byte string by calling :func:`~cryptography.x509.ExtensionType.public_bytes`. * Added experimental support for compiling against BoringSSL. As BoringSSL does not commit to a stable API, ``cryptography`` tests against the latest commit only. Please note that several features are not available when building against BoringSSL. * Parsing ``CertificateSigningRequest`` from DER and PEM now, for a limited time period, allows the ``Extension`` ``critical`` field to be incorrectly encoded. See `the issue <https://github.com/pyca/cryptography/issues/6368>`_ for complete details. This will be reverted in a future ``cryptography`` release. * When :class:`~cryptography.x509.OCSPNonce` are parsed and generated their value is now correctly wrapped in an ASN.1 ``OCTET STRING``. This conforms to :rfc:`6960` but conflicts with the original behavior specified in :rfc:`2560`. For a temporary period for backwards compatibility, we will also parse values that are encoded as specified in :rfc:`2560` but this behavior will be removed in a future release. .. _v35-0-0: ```
Links - PyPI: https://pypi.org/project/cryptography - Changelog: https://pyup.io/changelogs/cryptography/ - Repo: https://github.com/pyca/cryptography
pyup-bot commented 2 years ago

Closing this in favor of #292