Improve API for Julia 1.0.2 using keyword arguments

diegozea / MIToS.jl

A Julia package to analyze protein sequences, structures, and evolutionary information

https://diegozea.github.io/MIToS.jl/stable/

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Improve API for Julia 1.0.2 using keyword arguments #47

Closed diegozea closed 4 months ago

diegozea commented 5 years ago

[x] deprecate @residue... macros and use kw args instead
[x] make map...freq simpler with kw args and default values

diegozea commented 4 months ago

MIToS v2.20.0 has deprecated the @residues macro and the residues function in favor of select_residues that use keyword arguments.

diegozea commented 4 months ago

MIToS v.2.22.0 makes easy the API of the functions defined in the Information module by using keyword arguments and sensible defaults. In particular, it now defines the mapfreq function and uses it to define information measures, such as shannon_entropy, mutual_information, on multiple sequence alignments.