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dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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Allow user to specify output location of DCC generated files #16

Closed tjakobi closed 8 years ago

tjakobi commented 8 years ago

All files are currently created in the working folder, which makes usage in a pipeline environment more complicated than is has to be.

Especially the fixed Chimeric.out files would be always placed in the folder that contains the original Chimeric.out files.