DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
convertjunctionfile2bamfile() is hard coded to only detect STAR-like BAM files. If there are BAM files with other naming schemes, they are not detected. Luckily the program would just terminate and not crash in that case.
convertjunctionfile2bamfile() is hard coded to only detect STAR-like BAM files. If there are BAM files with other naming schemes, they are not detected. Luckily the program would just terminate and not crash in that case.