-temp / -k option: file cleanup does not work and fails for some files

dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

https://dieterichlab.org/software/

GNU General Public License v3.0

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-temp / -k option: file cleanup does not work and fails for some files #22

Closed tjakobi closed 8 years ago

tjakobi commented 8 years ago

Make sure that all temporary files are deleted on exist. Make also sure that the process does not fail if certain files are missing.

Important: use a secure erase function in such a way that "-O /" does not kill the whole system!

tjakobi commented 8 years ago

Re-introduced tmp_ prefix for all temporary files to have a more convenient way of deleting "all temp files"