CircCoordinate file gene annotation conatins only "." when run without -ss

dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

https://dieterichlab.org/software/

GNU General Public License v3.0

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CircCoordinate file gene annotation conatins only "." when run without -ss #26

Closed tjakobi closed 8 years ago

tjakobi commented 8 years ago

Seems to somehow be related to the -ss option. Can be reproduced with minimal default test set.

tjakobi commented 8 years ago

Further investigation shows that the issue is related to the -F filtering step.

tjakobi commented 8 years ago

Fixed in 6a01516d07128a856d80c9e642bf7fc0e336a937.