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dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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gene feature annotation looks incorrect #34

Open CDieterich opened 7 years ago

CDieterich commented 7 years ago

Hi, It looks as if we occasionally get wrong gene feature annotations.

For example, 16 48610390 48634964 Irf2 1 - exon-exon five_prime_utr,exon,gene,transcript,CDS

should include start codon (by definition -> 5UTR and CDS is included as well). This example is from the rat genome (EnsEMBL 85)