DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
reason : mate1 and mate2 are not available in single end mode
if options.bam and (len(options.bam) != len(options.mate1)):
logging.info("BAM file list is shorter than mate list. Maybe you forgot the @ (@file.list)?")
print("BAM file list is shorter than mate list. Maybe you forgot the @ (@file.list)?")
exit(-1)
reason : mate1 and mate2 are not available in single end mode
if options.bam and (len(options.bam) != len(options.mate1)): logging.info("BAM file list is shorter than mate list. Maybe you forgot the @ (@file.list)?") print("BAM file list is shorter than mate list. Maybe you forgot the @ (@file.list)?") exit(-1)