search

dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
36 stars 20 forks source link

guessing one bam or all inputs #43

Open jorgeboucas opened 7 years ago

jorgeboucas commented 7 years ago

https://github.com/dieterich-lab/DCC/blob/2afef01a06412b6b15a6bd49842bc706c0e648a4/DCC/main.py#L397

when no list of bams is provided only on his guessed and used as reference for all inputs in sample sheet

headers in LinearCount are then the rights ones though (can be dangerous if -B list is not sorted in the same order as the sample sheet).