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dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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Dubious CircSkipJunctions output #47

Closed CDieterich closed 6 years ago

CDieterich commented 6 years ago

I have noticed some splice junction output that does not make any sense (i.e. no supporting reads)

in /prj/circRNA_ENCODE3/workflow/DCC_CD_07_2017/CircSkipJunctions I found 1 26255171 26255865 0 0 0 0 0 00 0 0 0 0 0 0 1:26244319-26257596:0 00 0 0

tjakobi commented 6 years ago

I could trace back the error to the temporary count files created by DCC. I am now rerunning the same project to generate those temporary files again for further analysis.

CDieterich commented 6 years ago

Did you push a fix for this problem, too ?

tjakobi commented 6 years ago

I need to run tests to make sure everything is working now. Code will be pushed afterwards.