DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
The CircSkipJunctions output file now has a fourth default column that includes the strand of the annotation. Also, all non-zero entries have now the following format: 1:9930458-9935491-:2, therefore including the strand information before the read count.
The
CircSkipJunctionsoutput file now has a fourth default column that includes the strand of the annotation. Also, all non-zero entries have now the following format:1:9930458-9935491-:2, therefore including the strand information before the read count.