Closed ChrisLou-bioinfo closed 2 years ago
Dear @ChrisLou-bioinfo ,
does DCC exit with an error message (a Python error or similar on the console) or with a clean status 0? You may want to run DCC again with the -k
flag in order to keep temporary files that may be helpful for debugging.
Cheers, Tobias
Hi,Tobias Thanks for your reply There are some warnings about memory-error
Using files _tmp_DCC/tmp_circCount and _tmp_DCC/tmp_coordinates for filtering
Traceback (most recent call last):
File "/home/dell/.local/bin/DCC", line 11, in
My Server Memory is 64GB Sample Number is 168
thanks
Chris
Dear @ChrisLou-bioinfo,
thank you for your feedback. I never ran DCC with so many samples, it may actually be a memory issue. I will see if I can reduce the memory usage in this part of the code.
Cheers, Tobias
Thanks! Waiting for your software updated
2018-07-02 04:22:50,597 Combining individual circRNA read counts 2018-07-02 19:54:58,365 Swapping strand information 2018-07-02 19:56:08,607 Write in annotation 2018-07-02 19:56:08,607 Select gene features in Annotation file 2018-07-02 20:17:05,993 Filtering started 2018-07-02 20:17:05,993 Using files _tmp_DCC/tmp_circCount and _tmp_DCC/tmp_coordinates for filtering
process stop at 2018-07-02 20:17:05,993 Using files _tmp_DCC/tmp_circCount and _tmp_DCC/tmp_coordinates for filtering
run commend: DCC @samplesheet -mt1 @mate1 -mt2 @mate2 -D -R /home/dell/refer/hg38_DCC_Repeats.gtf -an /home/dell/refer/gencode.v28.primary_assembly.annotation.gtf -Pi -ss -L 20 -F -M -Nr 1 2 -fg -T 20
the monitor had showed nothing about DCC program
thanks