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dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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No strand info in circRNACounts when using -F filter #59

Open egaffo opened 5 years ago

egaffo commented 5 years ago

I'm using DCC v0.4.6 and I saw that when setting the -F filter the strand info is no longer specified in the circRNACount result file. I run on one sample.

daaaaande commented 4 years ago

see the same here all other option set to default , paired end mode, hg38 -F -Pi -M -Nr 2 1 if the -F flag is removed in this case, the strand re-appears in the output files. This did not happen before version 0.4.6 AFAIK