How to download or create the "repeat.gtf"

dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

https://dieterichlab.org/software/

GNU General Public License v3.0

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How to download or create the "repeat.gtf" #62

Closed Scathacheng closed 5 years ago

Scathacheng commented 5 years ago

Hi there, I don't know how to download repeat.gtf in UCSC table browser, actually I can't find the right option. Or is there any way to create a repeat.GTF using existing file? Could you please tell me how to prepare this repeat.gtf. Thanks!

Scathacheng commented 5 years ago

all right, I think I know how to download that, thanks!

tjakobi commented 5 years ago

Okay, great. I'll to improve the documentation on this issue.