Problem with empty Chimeric junction files

dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

https://dieterichlab.org/software/

GNU General Public License v3.0

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Problem with empty Chimeric junction files #8

Closed CDieterich closed 8 years ago

CDieterich commented 8 years ago

line 80 in fix2chimera.py if len(inputfile.readline().split('\t')[field-1].split('.')[-1]) == 1:

this dies if Chimeric junction file is empty.