search

dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
36 stars 20 forks source link

Single end reads and function checkjunctionfiles #9

Closed CDieterich closed 8 years ago

CDieterich commented 8 years ago

if checkjunctionfiles(options.Input, options.mate1, options.mate2): logging.info("circRNA detection skipped due to empty junction files") print("circRNA detection skipped due to empty junction files")

Please make sure that the software works even if options.mate1 and options.mate2 are not given (i.e. single end sequencing)

CDieterich commented 8 years ago

BTW,

File "build/bdist.linux-x86_64/egg/DCC/main.py", line 451, in checkjunctionfiles TypeError: object of type 'NoneType' has no len()

CDieterich commented 8 years ago

File "build/bdist.linux-x86_64/egg/DCC/main.py", line 451, in checkjunctionfiles TypeError: object of type 'NoneType' has no len()

tjakobi commented 8 years ago

Thank your for reporting the issue. The issue was addressed in the new release 0.3.4.