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dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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circFilter.py need more than 8 values to unpack #91

Closed yemao701 closed 2 years ago

yemao701 commented 3 years ago

When I ran DCC, I encounterd this warning, can you help me with this problem? Thank you!

QQ截图20210201195409

tjakobi commented 3 years ago

The repeat file you are supplying seems not to be formatted correctly.

Could you paste the first 50 lines of the repeat file?

yemao701 commented 3 years ago

Thank you for your timely response! Here are a few lines of my repeat file

chr10 TRF exon 1 49 55 + gene_id "TR0000001"; chr10 TRF exon 1 49 64 + gene_id "TR0000002"; chr10 TRF exon 2866 2938 101 + gene_id "TR0000003"; chr10 TRF exon 3521 3563 86 + gene_id "TR0000004"; chr10 TRF exon 11806 11835 51 + gene_id "TR0000005"; chr10 TRF exon 14792 14832 64 + gene_id "TR0000006"; chr10 TRF exon 26371 26405 63 + gene_id "TR0000007"; chr10 TRF exon 29523 29551 58 + gene_id "TR0000008"; chr10 TRF exon 31484 31692 409 + gene_id "TR0000009"; chr10 TRF exon 33143 33167 50 + gene_id "TR0000010"; chr10 TRF exon 34030 34060 62 + gene_id "TR0000011"; chr10 TRF exon 34544 34582 55 + gene_id "TR0000012"; chr10 TRF exon 37933 37996 119 + gene_id "TR0000013"; chr10 TRF exon 39153 39185 50 + gene_id "TR0000014"; chr10 TRF exon 40851 40892 57 + gene_id "TR0000015"; chr10 TRF exon 43143 43167 50 + gene_id "TR0000016"; chr10 TRF exon 51177 51216 71 + gene_id "TR0000017"; chr10 TRF exon 59764 59798 70 + gene_id "TR0000018"; chr10 TRF exon 65692 65720 51 + gene_id "TR0000019"; chr10 TRF exon 65898 65932 70 + gene_id "TR0000020"; chr10 TRF exon 65932 65964 66 + gene_id "TR0000021"; chr10 TRF exon 67434 67517 150 + gene_id "TR0000022"; chr10 TRF exon 72959 72984 52 + gene_id "TR0000023"; chr10 TRF exon 96988 97020 66 + gene_id "TR0000024"; chr10 TRF exon 106974 107002 58 + gene_id "TR0000025"; chr10 TRF exon 115971 116017 67 + gene_id "TR0000026"; chr10 TRF exon 118965 118996 57 + gene_id "TR0000027"; chr10 TRF exon 124420 124460 82 + gene_id "TR0000028"; chr10 TRF exon 124714 124752 78 + gene_id "TR0000029"; chr10 TRF exon 127650 127680 53 + gene_id "TR0000030"; chr10 TRF exon 128802 128844 79 + gene_id "TR0000031"; chr10 TRF exon 136332 136372 73 + gene_id "TR0000032"; chr10 TRF exon 143827 143879 63 + gene_id "TR0000033"; chr10 TRF exon 151258 151317 111 + gene_id "TR0000034"; chr10 TRF exon 154951 154976 52 + gene_id "TR0000035"; chr10 TRF exon 160349 160380 55 + gene_id "TR0000036"; chr10 TRF exon 169740 169777 76 + gene_id "TR0000037"; chr10 TRF exon 170323 170375 72 + gene_id "TR0000038"; chr10 TRF exon 178159 178201 61 + gene_id "TR0000039"; chr10 TRF exon 180519 180599 110 + gene_id "TR0000040"; chr10 TRF exon 187792 187828 60 + gene_id "TR0000041"; chr10 TRF exon 188311 188335 50 + gene_id "TR0000042"; chr10 TRF exon 204218 204251 68 + gene_id "TR0000043"; chr10 TRF exon 210393 210417 50 + gene_id "TR0000044";

tjakobi commented 3 years ago

If those columns are tab separated that looks fine.

Is there any way you could upload the complete file somewhere? Some lines seems to have more than 8 columns.