DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
line 149 of main.py
if (options.mate1 and not options.mate1) or (options.mate2 and not options.mate1) and options.pairedendindependent:
should be
if (options.mate1 and not options.mate2) or (options.mate2 and not options.mate1) and options.pairedendindependent:
?
Anyhow, the code eventually works as intended and this issue seems to be harmless.
Enrico
Edit: similar at line 204
if (not options.mate1 or not options.mate1) and options.pairedendindependent:
... perhaps I am missing some logic?
line 149 of main.py
if (options.mate1 and not options.mate1) or (options.mate2 and not options.mate1) and options.pairedendindependent:should beif (options.mate1 and not options.mate2) or (options.mate2 and not options.mate1) and options.pairedendindependent:?Anyhow, the code eventually works as intended and this issue seems to be harmless.
Enrico
Edit: similar at line 204
if (not options.mate1 or not options.mate1) and options.pairedendindependent:... perhaps I am missing some logic?