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dieterich-lab / DCC

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
https://dieterichlab.org/software/
GNU General Public License v3.0
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detect module doesnt work! #95

Closed semiramisgh closed 2 years ago

semiramisgh commented 3 years ago

I am running circtools on my dataset to detect circRNAs. I have prepared input files like : .bam .bam.bai and all .junction files but unfortunately after many tries and errors still it fails with this error: required detect file is missing.

circtools detect @samplesheet samplesheet is a file name including all junction file paths.

could you please help me to figure out what is wrong?

tjakobi commented 3 years ago

Dear @semiramisgh,

thank your for using DCC and sorry for the late response.

Could you please paste the contents of the samplesheet file as well as other input files?

Moreover, could you please provide the complete command line for DCC?