search

dieterich-lab / FUCHS

FUCHS - FUll circle CHaracterization from rna-Seq
GNU General Public License v3.0
3 stars 6 forks source link

strand in "sample.exon_counts.bed" file #15

Open qindan2008 opened 7 years ago

qindan2008 commented 7 years ago

Dear FranziMe， I found several circRNAs whose strand in "sample.exon_counts.bed" generated by FUCHS differed with their strand in "CircCoordinates" generated by DCC . For example, 2 circRNAs in "sample.exon_counts.bed" like below: chr8 132836540 132844318 -
chr1 146874669 146892807 +

But in "CircCoordinates" , it showed the opposite: chr8 132836540 132844318 +
chr1 146874669 146892807 -

Does "Strand" in "sample.exon_counts.bed" just mean strand of the host-gene and not strand of the circRNA ? How can I find circRNA's strand ? Is the information just stored in "CircCoordinates" ?