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dieterich-lab / JACUSA2

New version of JACUSA -> 2.0
GNU General Public License v3.0
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The jacusa2 result lost the last base(amplicon data) #38

Open elaine-bio opened 3 years ago

elaine-bio commented 3 years ago

HI: I use the jacusa2 to run my amplicon data, but the result lost the last position of the ref, that is, if my ref is 182bp long, the jacusa2 result only print the 1-181bp. The parameters I used are listed below. ############# java -jar jacusa2.jar call-1 -A \ -r call1.out \ -q 30 \ -c 10 \ -R ref.fa \ aligned.bam

piechottam commented 3 years ago

Could it be that the missing position has less than 10 reads?