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dieterich-lab / circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
http://circ.tools
GNU General Public License v3.0
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Add per exon p-value and log2 fold changes to exon Excel output #48

Open tjakobi opened 6 years ago

tjakobi commented 6 years ago

Right now the Excel file could provide more detailed information that is scattered throughout different files. This information should be unified in the produced .XLS file.

Bonus points: can we also incorporate newly detected exons from the reconstruct/FUCHS module?

tjakobi commented 6 years ago

Addressing the bonus point of FUCHS exons: This might be a more complex task since the script directly reads the ballgown output and currently does not add any other annotation to the data. I assume we would have to re-create the ballgown data with the added exons first instead of try to merge information later.