Fix broken pysam dependency of HTseq for DCC

dieterich-lab / circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

http://circ.tools

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Fix broken pysam dependency of HTseq for DCC #58

Closed tjakobi closed 5 years ago

tjakobi commented 5 years ago

DCC requires HTseq that does not install with the most recent pysam version. We have to manually specify the pysam version to be 0.13.0.

tjakobi commented 5 years ago

Fixed in commit dieterich-lab/DCC@68c213330bfd5ab1a4419b5a35a067bc8f792c0d.

Additionally, the latest release of HTseq, released two days ago (0.11.0) also fixes this issues and installs fine with pysam >= 0.13.