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dieterich-lab / circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
http://circ.tools
GNU General Public License v3.0
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Integration of the alternative exon usage script #6

Closed tjakobi closed 6 years ago

tjakobi commented 7 years ago

The problem of incorrect plots generated by the ggplot part of the script persists. The problem is related to inconsistent exon start-stop coordinates between reducedExon and exonValues. The issue only occurs in the plotting part and does not seem to influence the generation of BED tracks by the script.

Until we find a final solution we should either prepare a note for users regarding the issue or disable the plotting function entirely.

CDieterich commented 7 years ago

Don't waste your time on ggplot. BEDGRAPH and BED tracks should be fine for output / visualization.

tjakobi commented 7 years ago

Yeah, that's what I meant.

I'll disable the plotting function for now since most of the plots won't show up correctly anyway.