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dieterich-lab / circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
http://circ.tools
GNU General Public License v3.0
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Formatter broken #70

Closed tjakobi closed 5 years ago

tjakobi commented 5 years ago

It seems the formatter R script broke with a recent update of one of the R libraries:

Sending 19 primers to BLAST
This may take a few minutes, please be patient.
Error in dimnames(x) <- dn : 
  length of 'dimnames' [2] not equal to array extent
Calls: %>% ... freduce -> withVisible -> <Anonymous> -> kable -> colnames<-
Execution halted

The issue is caused by the forward & reverse columns that hold the primer sequence and the graphical overlay.