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dieterich-lab / circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
http://circ.tools
GNU General Public License v3.0
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Error in dplyr/rlang version using primex module #79

Closed skambha6 closed 5 years ago

skambha6 commented 5 years ago

When using Primex module, I get the error message copied below. Appears to be due to not having the fully updated version of dplyr which may be related to which versions of the R dependencies/packages that are installed during circtools installation.

circtools primex -d 01_detect/CircCoordinates -f ../Mus_musculus.GRCm38.dna.primary_assembly.fa -g ../Mus_musculus.GRCm38.90.gtf -O mm -G Ryr2 -T "Ryr2 primer"

Error message: Error in mutate_impl(.data, dots) : Evaluation error: as_dictionary() is defunct as of rlang 0.3.0. Please use as_data_pronoun() instead. Calls: %>% ... as.data.frame -> mutate -> mutate.tbl_df -> mutate_impl -> .Call

-OSX 10.11.6 -R 3.3.1

tjakobi commented 5 years ago

This issue is caused by an outdated version of dplyr.

dplyr has to be updated to >=0.7.7.

See also: https://github.com/r-lib/rlang/issues/674

Has to be fixed possibly by forcing an update of dplyr during install.