How to generate mod="${data}/GLORI_chrX.bed" for my own data?

dieterich-lab / mAFiA

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How to generate mod="${data}/GLORI_chrX.bed" for my own data? #1

Open Dongxu-Zheng opened 2 months ago

Dongxu-Zheng commented 2 months ago

Hi thanks for developing this tool for m6A modification. Maybe I missed it, but I was wondering how to generate this bed file for my own data analysis? Am I supposed to make the bed file for each query A sites genome-wide? Thanks for any help!

Cheers, Dongxu

ADHDrian commented 1 month ago

Hi @Dongxu-Zheng , the current release expects a list of query sites given by the user. There is a script (in development) for generating all the mod sites in each chromosome. If you are after something specific, please let me know.