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dieterich-lab / nmdtxdb

Shiny application and code for the database for NMD targets
https://shiny.dieterichlab.org/app/NMDtxDB
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Heatmap in case of multiple contrasts #11

Closed CDieterich closed 8 months ago

CDieterich commented 1 year ago

The table in the transcript view becomes a little bit hard to navigate if many transcripts and ORFs exist and many contrast are chosen. A heatmap or dotplot next to the transcript structures would be a nice enhancement.

gray dots = not significant else: fold-change as color and -log(p-value) as dot size

What do you think ?

CDieterich commented 1 year ago

grafik

similar to this one.

CDieterich commented 1 year ago

one row per displayed transcript

tbrittoborges commented 1 year ago

Prototype (transcript were not aligned):

image

CDieterich commented 1 year ago

Yes, this is exactly what I had in mind (pending alignment)

tbrittoborges commented 8 months ago

See 82f0e3ad5652a4fa771d27a92c48400e33306ea5