subprocess.CalledProcessError: Command 'STAR --runMode genomeGenerate --genomeDir 。。。。

[z626093820]

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Description A clear and concise description of what the issue is. when i use the command 'prepare-rpbp-genome c-elegans-test.yaml' there are some questions Expected behavior A clear and concise description of what the expected behavior is. solve the problems To Reproduce Describe detailed steps to reproduce the issue:

1. step 1
2. step 2
3. you get it...

Output If relevant, paste the output of the steps above, including the commands themselves and traceback, etc.

Environment

• Pip version
• Python version
• 3.6
• Operating system
• debian

Additional context Add any other context about the problem here. when i use the command 'prepare-rpbp-genome c-elegans-test.yaml' there are some questions,such as:

/ribosomal-index/X03680_1.rev.2.bt2'] already exist. Skipping call: bowtie2-build-s /path/to/your/c-elegans-example/X03680_1.fasta /path/to/your/c-elegans-example/WBcel235.79.chrI/ribosomal-index/X03680_1 Segmentation fault Traceback (most recent call last): File "/home/user/soft/python36env/bin/prepare-rpbp-genome", line 33, in sys.exit(load_entry_point('rpbp==2.0.0', 'console_scripts', 'prepare-rpbp-genome')()) File "/home/user/soft/python36env/lib/python3.6/site-packages/rpbp/reference_preprocessing/prepare_rpbp_genome.py", line 224, in main overwrite=args.overwrite, call=call) File "/home/user/soft/python36env/lib/python3.6/site-packages/pbio/misc/shell_utils.py", line 346, in call_if_not_exists ret_code = check_call(cmd, call=call, raise_on_error=raise_on_error) File "/home/user/soft/python36env/lib/python3.6/site-packages/pbio/misc/shell_utils.py", line 194, in check_call return check_call_step(cmd, call=call, raise_on_error=raise_on_error) File "/home/user/soft/python36env/lib/python3.6/site-packages/pbio/misc/shell_utils.py", line 177, in check_call_step raise subprocess.CalledProcessError(ret_code, cmd) subprocess.CalledProcessError: Command 'STAR --runMode genomeGenerate --genomeDir /path/to/your/c-elegans-example/WBcel235.79.chrI/star-index --genomeFastaFiles /path/to/your/c-elegans-example/WBcel235.chrI.fa --runThreadN 1 --limitGenomeGenerateRAM 2147483648' returned non-zero exit status 139.

how can i solve it? Thank you

[z626093820]

i fix the problem by update the STAR to 2.7.9a