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dieterich-lab / rp-bp

Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.
MIT License
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Inconsistent requirements for bio-utils #89

Closed joshua-gould closed 6 years ago

joshua-gould commented 6 years ago

https://github.com/dieterich-lab/rp-bp/blob/master/setup.py lists 'bio-utils==0.2.4' as a requirement, but https://github.com/dieterich-lab/rp-bp/blob/master/requirements.txt lists '0.2.5'

eboileau commented 6 years ago

Requirements in setup.py for rp-bp were updated in dev after version bump. This is known, and we aim to fix this very soon, as misc will also be updated. Meanwhile, you can change setup.py:

external_requirements = [
...
    'misc==0.2.5', # this has to be installed via requirements.txt
    'riboutils==0.2.6', # this, too,
    'bio-utils==0.2.5'  # and me!
]

or use dev. The requirements are correct:

git+https://github.com/bmmalone/pymisc-utils.git@0.2.5#egg=misc
git+https://github.com/dieterich-lab/pybio-utils.git@0.2.5#egg=bio_utils
git+https://github.com/dieterich-lab/riboseq-utils.git@0.2.6#egg=riboutils
.
eboileau commented 6 years ago

All requirements fixed in patch version 1.1.12. Closing this issue.