I have a question regarding the default visualization in cell_type_assignments_by_spot_jitter.pdf. My data comes from Stereo-seq (bin=50), and I noticed that in your method, each spot is decomposed into multiple cells, which initially share the same coordinates. To display all the cells in cell_type_assignments_by_spot_jitter, you introduce jittered coordinates for visualization purposes.
I would like to ask: how can we ensure that the added jittered coordinates won’t affect downstream cell neighborhood analysis or other spatial analyses?
Thank you for providing such a useful package!
I have a question regarding the default visualization in cell_type_assignments_by_spot_jitter.pdf. My data comes from Stereo-seq (bin=50), and I noticed that in your method, each spot is decomposed into multiple cells, which initially share the same coordinates. To display all the cells in cell_type_assignments_by_spot_jitter, you introduce jittered coordinates for visualization purposes.
I would like to ask: how can we ensure that the added jittered coordinates won’t affect downstream cell neighborhood analysis or other spatial analyses?
Thank you for your time and support!