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digitalcytometry / cytotrace2

CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
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Cytotrace2_py without R dependency #20

Closed Starlitnightly closed 3 months ago

Starlitnightly commented 3 months ago

Hi, I rewrote smoothDatakNN.R in Python, and the associated plotting was implemented using scanpy.pl, so I can submit a Pull Request if you guys need it.

Zehua

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savagyan00 commented 3 months ago

Hi,

Thank you so much for using CytoTRACE 2 and your effort in rewriting smoothDatakNN.R in Python. We really appreciate your initiative to enhance the tool's capabilities and will definitely review your pull request soon. Our team is continuously working on improving the tool, and we are excited to integrate our efforts for a better outcome for the whole community.

We hope our tool continues to be useful in your work. Let us know in case of any questions at any time!

Starlitnightly commented 3 months ago

Hi,

Thank you so much for using CytoTRACE 2 and your effort in rewriting smoothDatakNN.R in Python. We really appreciate your initiative to enhance the tool's capabilities and will definitely review your pull request soon. Our team is continuously working on improving the tool, and we are excited to integrate our efforts for a better outcome for the whole community.

We hope our tool continues to be useful in your work. Let us know in case of any questions at any time!

I've added the smoothDatakNN.py file, and for the adata input, it doesn't quite match the cytotrace2 expression input format, and I'm worried about changing it too much in package!

Zehua