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digivet-consortium
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movenet
Generating network representations for livestock movement (and associated) data
https://digivet-consortium.github.io/movenet/
GNU General Public License v3.0
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Add pipeline analysing effects of movement weight modifications
#85
CarlijnB
closed
1 month ago
0
Add utils for static network representations
#84
CarlijnB
closed
1 month ago
0
Add tests for trace_contact_chains() geographical aggregation
#83
CarlijnB
opened
2 months ago
0
Trace contact chains leaflet
#82
CarlijnB
closed
2 months ago
0
anonymise(data, key) assumes numbering in key starts at 1
#81
CarlijnB
opened
2 months ago
0
Remove SimInf and fix some R CMD check notes/warnings
#80
mdenwood
closed
2 months ago
1
make jitter_weights() return relevant number of decimals
#79
CarlijnB
opened
7 months ago
0
Make jitter_weights() work with percentage ranges
#78
CarlijnB
opened
7 months ago
0
bug in load_config: asciification prevents use of col indices
#77
CarlijnB
closed
7 months ago
1
Split jitter rounding
#76
CarlijnB
closed
1 year ago
0
Add asciify() to column options in change_config()
#75
CarlijnB
opened
1 year ago
1
Integrate modelling
#74
CarlijnB
closed
1 year ago
0
Run siminf models: how to resample initial infected node?
#73
CarlijnB
opened
1 year ago
0
To do: test various randomise_voronoi options
#72
CarlijnB
closed
2 months ago
0
Make data2contactmatrix output key
#71
CarlijnB
closed
1 year ago
1
create_local_sp_matrix & create_move_sp_matrix ordering doesn't work if non-numeric
#70
CarlijnB
closed
1 year ago
1
Holding and move configs simultaneously in env
#69
CarlijnB
closed
1 year ago
0
Validate_config_datatype() + change_config(): improve date format testing
#68
CarlijnB
closed
1 year ago
1
Reformat coordinates in reformat data
#67
CarlijnB
closed
1 year ago
0
Plotting networks geographically - considerations
#66
CarlijnB
opened
1 year ago
0
Tidy up branches
#65
CarlijnB
opened
1 year ago
0
isTRUE vs ==TRUE
#64
CarlijnB
closed
1 year ago
2
Numeric col indices: when updating to colnames in movenetenv, names are not asciified
#63
CarlijnB
closed
1 year ago
2
Add tests for validate_config_type
#62
CarlijnB
opened
1 year ago
1
internal_validate_config raises uninformative error when given template holding file
#61
CarlijnB
closed
1 year ago
0
load_config / validate_config not resulting in intended error when given datafile
#60
CarlijnB
closed
1 year ago
3
Check requirements for movement_data and holding_data; make consistent throughout
#59
CarlijnB
opened
1 year ago
0
Consider/test what happens with non-unique holding_ids in holding_data
#57
CarlijnB
opened
1 year ago
1
data2contactmatrix: what to do with active holdings with no coordinates (or not included in alternative tm matrix)?
#54
CarlijnB
closed
1 year ago
4
reformat_data - add check that holding ids are unique
#53
CarlijnB
closed
1 year ago
1
local_spread_transmission_probabilities default: NULL or ASF probabilities?
#52
CarlijnB
opened
1 year ago
0
Streamline reformat_data helper functions?
#51
CarlijnB
opened
1 year ago
0
move geographic formatting to reformat_data
#50
CarlijnB
closed
1 year ago
4
Add code to filter holding data in holdingids2consecints
#49
CarlijnB
closed
1 year ago
2
Simplify how movedata2networkDynamic deals with non-active holdings
#48
CarlijnB
closed
11 months ago
1
Options for reformat_id() [holdingids2consecints()]; potential integration w anonymise()?
#47
CarlijnB
closed
1 year ago
1
movedata2networkDynamic: set vertex.names for "additional holding data" nodes
#46
CarlijnB
closed
1 year ago
0
(To consider: ) simplicity/flexibility trade-off (arguments in function)
#45
CarlijnB
closed
1 year ago
0
how to define time period covered by data?
#44
CarlijnB
closed
1 year ago
1
movenetenv: include both holding and movement configs in environment at same time
#43
CarlijnB
closed
1 year ago
1
add docs on how to load a particular config by default
#42
CarlijnB
opened
1 year ago
5
move zzz.R to .gitignore?
#41
CarlijnB
closed
1 year ago
0
Testing helper function split in movedata2networkDynamic
#40
CarlijnB
closed
1 year ago
3
Splitting out functionality of reformat_data()
#39
CarlijnB
opened
1 year ago
1
Profile and optimise movedata2networkdynamic
#38
KangarooWasp
closed
1 year ago
0
Improved readme
#37
KangarooWasp
closed
1 year ago
1
Profile & optimise movedata2networkDynamic
#36
CarlijnB
closed
1 year ago
9
Tests fail
#35
trosendal
opened
1 year ago
2
Several dependancy errors
#34
trosendal
closed
1 year ago
0
SEIR model with contact matrix
#33
stewid
closed
1 year ago
0
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