I want to do a CIRS-seq analysis and I am doing rf-count-genome, but the job is not finished after three days.
The command is
"rf-count-genome -m -p 64 -wt 64 -r -o ./xxx -fh -f genome.fa xx.bam"
outfile has
[+] Making output directory...
[+] Guessing file types:
Sample Type 5'-end trimming Library type
XXXX BAM Ignored unstranded
[+] Importing chromosomes from reference, and building count table base structure...
[+] Inspecting SAM/BAM file headers...
[+] Assuming that provided SAM/BAM files are already sorted. Skipping sorting...
[+] Calculating per-base mutation counts and coverage. This may take a while...
[-] Processing sample "XXXX" (PID: 26829)
I want to do a CIRS-seq analysis and I am doing rf-count-genome, but the job is not finished after three days. The command is "rf-count-genome -m -p 64 -wt 64 -r -o ./xxx -fh -f genome.fa xx.bam"
outfile has [+] Making output directory... [+] Guessing file types:
Sample Type 5'-end trimming Library type
XXXX BAM Ignored unstranded
[+] Importing chromosomes from reference, and building count table base structure... [+] Inspecting SAM/BAM file headers... [+] Assuming that provided SAM/BAM files are already sorted. Skipping sorting... [+] Calculating per-base mutation counts and coverage. This may take a while... [-] Processing sample "XXXX" (PID: 26829)