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dincarnato / RNAFramework

RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
http://www.rnaframework.com
GNU General Public License v3.0
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no output with rf_compare #35

Closed Asperatus22 closed 1 year ago

Asperatus22 commented 1 year ago

Hi Danny I did the git pull last week to use Shapeknot-smp, and it works fine. but when i try to compare my structure with rf_compare i have the folowing screen output without any file output :

[+] Comparing structures to reference...

Transcript PPV Sensitivity

toto 0.79 0.80

[+] Comparison statistics:

[] Compared transcripts: 1 [] Excluded transcripts: 0 total 0 structure file parsing failed 0 mismatch between reference and query transcript sequences 0 missing structure file

[+] All done

have a great day

Lionel

dincarnato commented 1 year ago

Hi Lionel,

there should be no output. What output were you hoping for? The only output that rf-compare will generate is an arc plot comparison of the two structures, and to activate it you need to specify the -g flag.

Best, Danny

Asperatus22 commented 1 year ago

Hi Danny, it is the best way to look like a numb, ask a question to fast.... i was forget to use the -g option. sorry, and thanks Lionel