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dincarnato / RNAFramework

RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
http://www.rnaframework.com
GNU General Public License v3.0
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Question about RNAFramework rf-rctools view #46

Closed MeganSylvia closed 10 months ago

MeganSylvia commented 11 months ago

Hi Danny,

I was wondering if the rf-rctools view command was reversible. So we are able to view the rc file as a csv file. Can we then convert this csv file back to an rc file? This would allow me to test out some data filtering steps I would like to try.

Megan

dincarnato commented 11 months ago

Hi Megan,

it's not, but if you send me a sample file, I can write a script for you to enable to you do that.

Cheers, Danny

MeganSylvia commented 11 months ago

Hi Danny!

I prefer the tab version of your rc-rftools view script, so I have attached an example output that looks like your rc-rftools view -t output!

Megan CW_filtered_tab.txt

dincarnato commented 11 months ago

Here you are! Please let me know if it gives you issues. You will have to either specify the path to the RNA Framework's lib/ folder inside the script, or simply add it to your $PERL5LIB environment variable by:

export PERL5LIB=$PERL5LIB:/path/to/RNAFramework/lib

Cheers, Danny

txt2rc.gz

dincarnato commented 10 months ago

Did it work?

MeganSylvia commented 10 months ago

Hi Danny!

Sorry for the delay! I didn't see your original email. I just tried running it on the example one I sent you earlier and it worked perfectly! Thank you!

Megan

On Fri, Oct 20, 2023 at 9:07 AM Danny Incarnato @.***> wrote:

Did it work?

— Reply to this email directly, view it on GitHub https://github.com/dincarnato/RNAFramework/issues/46#issuecomment-1772708350, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASMX7WWBK33G2FU2TTRQ2ODYAJZP5AVCNFSM6AAAAAA6FTRDKOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTONZSG4YDQMZVGA . You are receiving this because you authored the thread.Message ID: @.***>