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dincarnato / RNAFramework

RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
http://www.rnaframework.com
GNU General Public License v3.0
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Multithreading cut adapt? #48

Closed herber4 closed 8 months ago

herber4 commented 9 months ago

It looks like cut adapt supports multithreading, but is defaulted to 1 core in the rf-map function. I did not see an option in the rf-map to specify multiple threads for cut adapt. can this be implemented?

best,

Austin

herber4 commented 9 months ago

actually sorry it looks like the multithreading cutadapt can be called with -wt option, however, it seems my cut adapt is installed with python2 and unable to multithread. I will have to talk to our admin to get this figured out... sorry!