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dincarnato / RNAFramework

RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
http://www.rnaframework.com
GNU General Public License v3.0
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rf-correlate #53

Closed Shuang1248 closed 7 months ago

Shuang1248 commented 7 months ago

Hi Danny, I use rf-correlate to  calculate the correlations of experiments using XML files, but I do not know what the results mean. Does the second column represents the correlation, and the third column represents the variance? And can I get the relations between replicates as a whole instead of single transcript? f75865483e2f5b902abefb22cc2a951

dincarnato commented 7 months ago

Hi Shuang,

you are right, I forgot to mention this in the manual. The second columns is the correlation, the third column is the p-value. If you want the correlation as a whole, you can find it in the console output.

Best, Danny

Shuang1248 commented 7 months ago

Oh， Danny， I see it, thank you for your help!