[!] No significant match with current search parameters problem

[sfsdfd62]

Dear dincarnato, Greetings. Below is my input. After I feed this into SHAPEwarp, it says [!] No significant match with current search parameters.

Seq_33
TCCGTTGACCTTAAACGGTCGTGTGGGTTCAAGTCCCTCCACCCCCACGCCGGAAACGCAATAGCCGAAAAACAAAAAACAAAAAAAACAAAAAAAAAACCAAAAAAACAAAACACAGGCGCGCCAGTCCTACAATGCCGGCCCAGCCGTTCGGTGCGCGATTGGCTGCCGCTGCCACTTACGCGTCGCTCTTCCTCGTTTGCCCCTCGTGTTCATGGGAGCTCGTTTTCTTTTCCTCTAGGCAGAGAAGAGGCGATGGCGGCGATGGCATCTCTCGGCGCCCTGGCGCTGCTCCTGCTGTCCAGCGACTCGGACCGATGATCATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTGGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCCCATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGAAAAAACAAAAAACAAAACGGCTATTATGCGTTACCGGCGAGACGCTACGGACTTAAATAATT 0.8226,0.1841,0.3423,0.7454,0.1663,0.2876,0.6101,0.1826,0.1621,0.2518,0.5162,0.1825,0.3113,0.2039,0.1265,0.5023,0.2247,0.1626,0.2984,0.1891,0.2892,0.2032,0.1436,0.2817,0.1655,0.2122,0.8882,0.2623,0.1358,0.8341,0.7871,0.1706,0.7459,0.1330,0.1316,0.7830,0.8013,0.7847,0.1617,0.7469,0.1000,0.7520,0.6493,0.7349,0.6548,0.7174,0.6898,0.6779,0.1904,0.6601,0.2429,0.6645,0.1880,0.6494,0.2392,0.6502,0.2360,0.1846,0.6382,0.2350,0.6345,0.2388,0.6003,0.2335,0.1254,0.2052,0.1943,0.3702,0.3712,0.2137,0.1408,0.1660,0.1521,0.2183,0.1552,0.1221,0.1469,0.2105,0.1300,0.1276,0.3871,0.3975,0.3922,0.1560,0.1196,0.1399,0.1187,0.1138,0.1124,0.1907,0.1887,0.2171,0.2154,0.1933,0.1487,0.2042,0.6235,0.2458,0.6268,0.6171,0.2239,0.2324,0.2292,0.8974,0.5093,0.1729,0.8056,0.5271,0.5301,0.6976,0.4337,0.8432,0.7896,0.7443,0.1549,0.1215,0.1560,0.3056,0.1205,0.1469,0.2603,0.2270,0.1858,0.2173,0.2242,0.2178,0.2188,0.2132,0.2464,0.6740,0.2224,0.2290,0.6015,0.2326,0.1440,0.2096,0.4231,0.3362,0.1354,0.3866,0.1801,0.3496,0.1992,0.3281,0.4867,0.1010,0.8310,0.3293,0.2045,0.2849,0.9880,0.1811,0.3429,0.1957,0.3247,0.4858,0.5094,0.8128,0.1098,0.2321,0.2640,0.8935,0.1930,0.2639,0.1919,0.3161,0.4746,0.5205,0.7759,0.2365,0.2468,0.8163,0.2412,0.3004,0.1333,0.2688,0.5138,0.7289,0.3453,0.1729,0.1801,0.7049,0.2216,0.1816,0.4915,0.3017,0.2439,0.4994,0.3582,0.1751,0.6219,0.2906,0.3520,0.1969,0.2373,0.4788,0.4858,0.8356,0.5604,0.2604,0.2815,0.1996,0.1861,0.4715,0.4736,0.8110,0.2346,0.1084,0.1634,0.2319,0.4624,0.4613,0.7844,0.1230,0.2311,0.1365,0.7596,0.4600,0.2090,0.4669,0.1250,0.1408,0.7375,0.4412,0.1436,0.1698,0.1858,0.4501,0.7178,0.3839,0.1309,0.1461,0.6987,0.1224,0.5580,0.5874,0.1252,0.5842,0.5723,0.2098,0.1871,0.1280,0.2322,0.1997,0.1668,0.1023,0.1299,0.1959,0.1706,0.3008,0.1923,0.3926,0.1224,0.2062,0.3289,0.2522,0.3485,0.1900,0.1325,0.2756,0.2268,0.2184,0.1821,0.1086,0.7021,0.3463,0.4034,0.7517,0.4120,0.4143,0.4521,0.2331,0.7402,0.4022,0.4214,0.4087,0.1958,0.7236,0.3495,0.4107,0.3609,0.5231,0.1770,0.6103,0.2068,0.1699,0.3289,0.6127,0.2189,0.1495,0.3438,0.6008,0.2029,0.2939,0.5895,0.1977,0.2660,0.1895,0.5549,0.1226,0.1721,0.1956,0.2414,0.1097,0.5580,0.5504,0.1808,0.1492,0.5406,0.1854,0.5752,0.1947,0.1821,0.1165,0.1692,0.6411,0.1734,0.1655,0.1695,0.6239,0.1641,0.1841,0.2355,0.6059,0.2405,0.1801,0.6407,0.2370,0.1483,0.1758,0.6276,0.1241,0.1097,0.2242,0.3411,0.1478,0.6139,0.1222,0.1091,0.2128,0.3359,0.1671,0.5934,0.1195,0.1053,0.2029,0.2796,0.2220,0.2297,0.3013,0.1167,0.1918,0.2286,0.1905,0.1132,0.1588,0.5791,0.1363,0.5835,0.1671,0.1659,0.1005,0.2125,0.2482,0.1391,0.1323,0.5738,0.1620,0.1777,0.2510,0.1744,0.1227,0.5643,0.1570,0.1656,0.2318,0.1550,0.1507,0.1147,0.1334,0.2177,0.3088,0.1228,0.1378,0.2993,0.1429,0.1008,0.1316,0.1666,0.1110,0.1055,0.1201,0.8630,0.1633,0.1039,0.8517,0.1534,0.8210,0.2078,0.2117,0.9178,0.2033,0.2083,0.7892,0.5379,0.1042,0.7634,0.4157,0.2022,0.1032,0.7162,0.2020,0.1004,0.1250,0.1137,0.1618,0.6882,0.1175,0.1636,0.6893,0.1082,0.1145,0.1781,0.2371,0.1598,0.6744,0.3779,0.1060,0.1846,0.2333,0.6596,0.3873,0.1152,0.1812,0.2199,0.1426,0.6433,0.3748,0.4432,0.2054,0.1476,0.1253,0.1910,0.9417,0.1149,0.1449,0.1774,0.5750,0.1819,0.4089,0.1274,0.7537,0.1783,0.5671,0.3979,0.2341,0.6244,0.4780,0.3798,0.2449,0.6433,0.2035,0.1381,0.1644,0.3563,0.1936,0.2392,0.6003,0.1087,0.2488,0.1992,0.2211,0.5513,0.1312,0.1730,0.2010,0.1614,0.5097,0.1203,0.1364,0.3005,0.1741,0.2069,0.4318,0.1354,0.1566,0.4060,0.1532,0.4690,0.2997,0.1739,0.1069,0.1983,0.1071,0.2030,0.1281,0.3515,0.3439,0.1318,0.1865,0.2679,0.1190,0.3312,0.2610,0.2672,0.6068,0.1145,0.2358,0.1554,0.2532,0.1112,0.3088,0.2910,0.1564,0.3918,0.5148,0.1130,0.1944,0.2342,0.1558,0.1014,0.1020,0.2851,0.2581,0.3451,0.4058,0.2118,0.2197,0.3346,0.2495,0.1955,0.3013,0.2852,0.1306,0.3451,0.1986,0.1286,0.2598,0.1682,0.1734,0.1869,0.8066,0.2331,0.4029,0.1413,0.2904,0.2462,0.7843,0.8436,0.2800,0.2226,0.4134,0.3937,0.3033,0.2877,0.7984,0.7529,0.2772,0.2209,0.4067,0.3802,0.2875,0.2644,0.7228,0.5739,0.1586,0.4274,0.3663,0.2719,0.2425,0.6641,0.4752,0.1495,0.4244,0.1166,0.5741,0.1559,0.4170,0.1150,0.1368,0.5409,0.1376,0.4954,0.3785,0.1780,0.3441,0.4801,0.3569,0.1683,0.2364,0.1730,0.3474,0.4564,0.3337,0.7681,0.2127,0.1629,0.3692,0.3019,0.7662,0.4719,0.1075,0.7222,0.2421,0.4657,0.4755,0.1639,0.4613,0.2345,0.4707,0.4539,0.2582,0.6448,0.2490,0.6148,0.2311,0.5814,0.1142,0.1151,0.1047,0.1414,0.6433,0.1737,0.1151,0.2006,0.5327,0.1304,0.5260,0.1427,0.1138,0.1216,0.4538,0.1060,0.1102,0.1101,0.2383,0.5157,0.3697,0.1616,0.2731,0.2483,0.2329,0.4969,0.3423,0.1321,0.1937,0.2462,0.1884,0.3935,0.1339,0.1335,0.2648,0.2399,0.2111,0.2857,0.4346,0.4966,0.1444,0.4273,0.4911,0.1066,0.1871,0.5188,0.3749,0.4797,0.1987,0.5784,0.2699,0.1562,0.4596,0.1968,0.6629,0.1822,0.2345,0.2033,0.6875,0.2931,0.4397,0.1233,0.2033,0.6841,0.3239,0.5239,0.1227,0.1965,0.6716,0.3175,0.5145,0.6579,0.3100,0.5043,0.6113,0.2918,0.4947,0.2847,0.4853,0.6579,0.2676,0.3500,0.6471,0.1410,0.3492,0.4334,0.1453,0.4685,0.2551,0.4621,0.5826,0.4258,0.1361,0.4574,0.1352,0.7727,0.5444,0.2733,0.8535,0.4985,0.2426,0.8204,0.5094,0.7737,0.4747,0.2796,0.7088,0.4448,0.2405,0.3224,0.4096,0.1965,0.3079,0.6410,0.3906,0.1696,0.1014,0.1022,0.5737,0.2478,0.4364,0.2249,0.2680,0.4764,0.1340,0.1122,0.5243,0.2228,0.5322,0.1300,0.1653,0.4749,0.2195,0.5196,0.4330,0.1168,0.1701,0.3072,0.4314,0.2621,0.2116,0.6688,0.4793,0.1640,0.3531,0.2258,0.6531,0.4672,0.3435,0.3580,0.3269,0.2985,0.4539,0.3005,0.3470,0.3144,0.3163,0.2940,0.5884,0.2906,0.2234,0.1315,0.2892,0.2988,0.2579,0.1777,0.2836,0.8071,0.1018,0.3826,0.3036,0.8051,0.1066,0.4304,0.2902,0.2809,0.2731,0.7942,0.1041,0.4204,0.2865,0.2689,0.4611,0.2341,0.7793,0.4101,0.2774,0.2198,0.4008,0.2693,0.2084,0.9021,0.7511,0.3918,0.2617,0.1085,0.8396,0.7381,0.3825,0.2276,0.3148,0.7138,0.3089,0.6962,0.2996,0.6461,0.1598,0.1782,0.4468,0.4563,0.3662,0.2318,0.2973,0.5998,0.1377,0.4442,0.3151,0.3633,0.2412,0.2917,0.5517,0.3575,0.2315,0.2846,0.5069,0.1327,0.1638,0.2683,0.4821,0.1227,0.3325,0.4588,0.1137,0.1169,0.3291,0.4383,0.1061,0.6354,0.2580,0.1726,0.3768,0.7788,0.2615,0.1732,0.2930,0.7983,0.2000,0.1065,0.1738,0.2011,0.6238,0.3839,0.3795,0.1903,0.1668,0.2000,0.5270,0.2883,0.5353,0.1880,0.1878,0.1967,0.6000,0.5668,0.2169,0.1329,0.1458,0.1895,0.4413,0.5577,0.2202,0.2091,0.3440,0.2284,0.5487,0.2146,0.1528,0.1931,0.7891,0.5382,0.1874,0.1388,0.1790,0.6876,0.1081,0.1672,0.1675,0.7526,0.2455,0.1660,0.1871,0.1579,0.6906,0.2937,0.1832,0.1439,0.6379,0.1345,0.3215,0.2962,0.1628,0.1801,0.2092,0.1002,0.2902,0.1182,0.7481,0.2904,0.2229,0.5642,0.1980,0.1291,0.2231,0.2070,0.5301,0.1082,0.2470,0.5352,0.1820,0.1285,0.2628,0.2462,0.4116,0.1394,0.2604,0.2416,0.4873,0.1097,0.3851,0.2368,0.3370,0.3317,0.1536,0.5996,0.3192,0.2243,0.4538,0.5075,0.4510,0.8424,0.3167,0.4392,0.5037,0.4624,0.7081,0.3056,0.1443,0.4253,0.4362,0.1470,0.4395,0.4228,0.6051,0.1705,0.4102,0.4261,0.3338,0.4191,0.3940,0.9125,0.1710,0.3032,0.3313,0.4012,0.3551,0.8760,0.1683,0.2873,0.4787,0.2267,0.3659,0.8093,0.1159,0.1693,0.2326,0.1667,0.5207,0.1344,0.2519,0.7865,0.1141,0.2201,0.1693,0.5065,0.1299,0.1707,0.1051,0.2061,0.1624,0.4895,0.1136,0.2443,0.7755,0.2797,0.4790,0.2029,0.3187,0.7615,0.2764,0.4760,0.3085,0.2715,0.4692,0.4628,0.3006,0.4614,0.1950,0.4535,0.2921,0.7696,0.1843,0.1825,0.4404,0.7649,0.1786,0.1720,0.7625,0.1963,0.1659,0.7386,0.9499,0.1947,0.4072,0.2128,0.6025,0.3984,0.1193,0.4667,0.2129,0.1203,0.2632,0.6836,0.3943,0.9214,0.2710,0.3282,0.1049,0.2635,0.6688,0.3350,0.8204,0.2717,0.3265,0.2576,0.6532,0.6865,0.8588,0.2505,0.2937,0.1239,0.6198,0.2804,0.4553,0.5166,0.1198,0.1250,0.2612,0.2126,0.5862,0.4024,0.1143,0.2535,0.2374,0.6234,0.2913,0.4842,0.3728,0.6030,0.1363,0.6449,0.2868,0.4755,0.3676,0.5611,0.2767,0.5322,0.1089,0.1514,0.1961,0.2480,0.2543,0.4319,0.1305,0.2640,0.2347,0.1045,0.5215,0.2601,0.2133,0.3834,0.5200,0.4451,0.2599,0.1096,0.4200,0.5110,0.2550,0.3986,0.1244,0.5425,0.2474,0.3805,0.1147,0.4330,0.2394,0.3476,0.6290,0.1344,0.6244,0.4760,0.1320,0.6115,0.3365,0.6057,0.5931,0.1975,0.5803,0.2165,0.4517,0.1944,0.5697,0.1991,0.3573,0.3937,0.1773,0.7932,0.3553,0.3883,0.1707,0.1016,0.6892,0.6449,0.5365,0.3190,0.5757,0.2252,0.5296,0.1751,0.3068,0.5688,0.5139,0.1667,0.1688,0.2745,0.2604,0.5154,0.2504,0.6812,0.1147,0.2081,0.6634,0.1720,0.5629,0.1712,0.7135,0.4973,0.1308,0.1669,0.6896,0.4502,0.1074,0.1538,0.6671,0.1019,0.3896,0.3589,0.6432,0.1322,0.3541,0.6239,0.1160,0.1025,0.4843,0.6021,0.4964,0.5846,0.7360,0.3855,0.8416,0.8517,0.2026,0.9279,0.2002,0.2075,0.9635,0.1968,0.2186,0.9482,0.2161,0.9319,0.1993,0.9174,0.9032,0.8750,0.7602,0.1120,0.9927,0.3022,0.1081,0.9534,0.2111,0.1039,0.8786,0.1643,0.8070,0.1385,0.6841,0.1044,0.1357,0.7353,0.1203,0.6237,0.1044,0.7014,0.1816,0.7114,0.1023,0.6753,0.1711,0.6934,0.6484,0.1609,0.6357,0.6977,0.1112,0.1682,0.1716,0.6724,0.1489,0.5973,0.1661,0.1689,0.1429,0.1619,0.5586,0.1641,0.1655,0.6699,0.1376,0.2725,0.5244,0.1266,0.6501,0.1171,0.1753,0.1291,0.8014,0.6391,0.1784,0.1287,0.7979,0.6308,0.1645,0.1268,0.7941,0.6115,0.1240,0.1045,0.7858,0.6142,0.1009,0.7679,0.5970,0.1751,0.7519,0.5808,0.1794,0.7357,0.5639,0.1728,0.1160,0.2480,0.1773,0.7381,0.3945,0.1713,0.1141,0.1705,0.7304,0.2217,0.3250,0.1670,0.1474,0.1218,0.7096,0.2170,0.4491,0.1072,0.1246,0.1560,0.1076,0.1161,0.4397,0.1292,0.2377,0.3517,0.1383,0.3467,0.2511,0.2052,0.3446,0.1763,0.2465,0.2061,0.1178,0.2352,0.1998,0.4319,0.4695,0.1218,0.4668,0.3269,0.3231,0.4702,0.2689,0.3165,0.1007,0.5404,0.1503,0.1006,0.4794,0.3008,0.1461,0.2970,0.1310,0.2914,0.1028,0.5022,0.4586,0.5089,0.1897,0.5283,0.1400,0.2731,0.4357,0.1901,0.6108,0.1294,0.1867,0.4983,0.4276,0.6533,0.4892,0.7119,0.4659,0.4056,0.6875,0.4419,0.3660,0.6648,0.4214,0.3339,0.2879,0.2071,0.2154,0.6421,0.2604,0.3215,0.1183,0.3458,0.3215,0.1582,0.2583,0.2478,0.2445,0.1606,0.2339,0.5298,0.1089,0.3238,0.2345,0.2209,0.8584,0.2501,0.3208,0.5378,0.3448,0.3078,0.2155,0.1908,0.1828,0.8904,0.2461,0.3149,0.3331,0.1700,0.1593,0.1225,0.1534,0.2429,0.3100,0.5231,0.2314,0.9492,0.2391,0.3045,0.5141,0.2295,0.2482,0.8524,0.8783,0.2317,0.5046,0.3103,0.1044,0.1442,0.7749,0.1184,0.5753,0.3210,0.2279,0.3132,0.1604,0.1364,0.2933,0.7097,0.4515,0.2071,0.3165,0.2235,0.3054,0.2332,0.1618,0.2821,0.1013,0.3811,0.1469,0.1745,0.4600,0.1123,0.1499,0.2539,0.1294,0.3873,0.5232,0.1436,0.2460,0.1128,0.5472,0.1341,0.1318,0.2904,0.1694,0.4221,0.7912,0.4561,0.2743,0.5328,0.1385,0.2824,0.4022,0.6472,0.2182,0.4486,0.5184,0.1351,0.2760,0.4102,0.5606,0.9917,0.2168,0.4407,0.2735,0.1979,0.2676,0.3965,0.5009,0.7628,0.3035,0.1874,0.2702,0.1311,0.1047,0.3242,0.2816,0.6160,0.1238,0.2097,0.4802,0.9485,0.2060,0.1800,0.4936,0.5040,0.8680,0.2638,0.1883,0.1823,0.5048,0.4823,0.1685,0.4604,0.7099,0.2748,0.1794,0.5246,0.4692,0.1844,0.4263,0.6143,0.2698,0.5181,0.4337,0.1749,0.3985,0.5410,0.1611,0.4026,0.2135,0.2639,0.1271,0.2604,0.2029,0.7244,0.2154,0.1896,0.7571,0.2125,0.1779,0.9895,0.7458,0.2048,0.9328,0.7333,0.1974,0.8494,0.7517,0.2552,0.1612,0.2380,0.6961,0.1286,0.7726,0.1152,0.7560,0.4677,0.6427,0.1017,0.1310,0.2255,0.5573,0.5249,0.1237,0.2224,0.6223,0.1162,0.1849,0.4255,0.2068,0.1589,0.6121,0.2405,0.1927,0.1904,0.7293,0.2423,0.1866,0.7099,0.2379,0.2226,0.2072,0.6572,0.2280,0.1618,0.2865,0.1529,0.1906,0.1573,0.1860,0.6035,0.1189,0.5895,0.1897,0.1879,0.1360,0.2085,0.1541,0.5107,0.3863,0.2452,0.1860,0.1762,0.5199,0.1220,0.3977,0.1145,0.2102,0.1728,0.2220,0.1329,0.4368,0.2366,0.5585,0.1920,0.1403,0.1389,0.4025,0.5443,0.1864,0.1369,0.1104,0.1276,0.3650,0.1412,0.1405,0.3555,0.1320,0.3029,0.1934,0.9820,0.2112,0.9286,0.2249,0.3933,0.1275,0.1026,0.8970,0.6554,0.2205,0.3862,0.1082,0.1214,0.8043,0.5137,0.3755,0.1094,0.7326,0.4324,0.1269,0.3594,0.6746,0.3768,0.5926,0.2381,0.1155,0.6105,0.2154,0.6048,0.1964,0.1030,0.9596,0.7003,0.4670,0.1113,0.9635,0.2152,0.6932,0.2015,0.4755,0.7935,0.2488,0.6836,0.1913,0.4400,0.6859,0.1936,0.5456,0.1742,0.2594,0.3686,0.3969,0.6938,0.1662,0.1765,0.4762,0.3627,0.2234,0.6286,0.1601,0.1688,0.5340,0.3158,0.2059,0.5546,0.1541,0.1364,0.5578,0.1905,0.1814,0.1472,0.1617,0.1319,0.5425,0.1756,0.4621,0.1794,0.1319,0.1341,0.5193,0.4296,0.1758,0.3927,0.3925,0.1397,0.1102,0.1011,0.1894,0.3897,0.1212,0.1106,0.1226,0.6301,0.1842,0.3759,0.1051,0.2799,0.4472,0.1208,0.1443,0.3117,0.3190,0.3642,0.3630,0.1205,0.1121,0.3130,0.3508,0.1447,0.3038,0.1988,0.3307,0.1134,0.1427,0.6667,0.2148,0.3217,0.1109,0.1924,0.1430,0.1422,0.7388,0.1734,0.2047,0.1440,0.2009,0.3071,0.1054,0.1969,0.1408,0.1392,0.7251,0.1707,0.1997,0.1411,0.1956,0.2926,0.1035,0.1804,0.1207,0.2861,0.1003,0.1689,0.2787,0.1362,0.8586,0.1462,0.2404,0.8575,0.1336,0.2410,0.8414,0.2348,0.1151,0.1097,0.1734,0.2391,0.2428,0.1175,0.2715,0.2414,0.3682,0.1184,0.2515,0.2152,0.1232,0.3724,0.1114,0.2200,0.1213,0.3632,0.1057,0.1967,0.1538,0.1393,0.1439,0.3097,0.1003,0.1789,0.2211,0.3577,0.1772,0.3674,0.1971,0.1420,0.3663,0.1309,0.1396,0.3682,0.2461,0.3640,0.2854,0.1550,0.1048,0.3134,0.2180,0.2828,0.1556,0.1052,0.1197,0.5219,0.2315,0.2904,0.1046,0.1531,0.1036,0.1230,0.1162,0.5216,0.3354,0.1469,0.1003,0.1078,0.4647,0.2860,0.1535,0.1452,0.2500,0.1507,0.1461,0.2810,0.2346,0.1703,0.4157,0.1973,0.1714,0.1185,0.4139,0.2045,0.4284,0.1832,0.8851,0.7249,0.1683,0.1276,0.4040,0.4520,0.1605,0.8037,0.6057,0.1652,0.1263,0.7518,0.7330,0.5128,0.1252,0.1240,0.3787,0.9622,0.1939,0.3453,0.3655,0.9498,0.3115,0.1279,0.1213,0.3442,0.1079,0.9401,0.1388,0.2479,0.1153,0.1252,0.1193,0.3436,0.9109,0.1798,0.1048,0.1733,0.2657,0.1768,0.1848,0.1999,0.1156,0.2578,0.1810,0.9119,0.1141,0.2456,0.1401,0.9964,0.2637,0.9766,0.9545,0.9349,0.9159,0.8861,0.4653,0.2406,0.2954,0.2028,0.4496,0.1985,0.4164,0.2114,0.3796,0.3891,0.1644,0.3645,0.3226,0.1948,0.2013,0.2737,0.9968,0.4157,0.1976,0.2630,0.8376,0.1632,0.1891,0.6833,0.6521,0.1440,0.5906,0.2737,0.1472,0.2504,0.2147,0.1593,0.1974,0.3156,0.1533,0.5416,0.1014,0.3120,0.5145,0.3011,0.4868,0.3403,0.3569,0.1057,0.1119,0.2512,0.1161,0.4369,0.1104,0.2489,0.7750,0.2016,0.4448,0.1077,0.2355,0.5797,0.7379,0.1983,0.4364,0.5131,0.6025,0.1949,0.4283,0.4638,0.5173,0.1917,0.4203,0.3067,0.2308,0.4230,0.4494,0.1220,0.3011,0.2190,0.3886,0.2827,0.1035,0.2981,0.3886,0.4543,0.1634,0.1655,0.1566,0.2764,0.4481,0.1567,0.1889,0.3252,0.8027,0.1384,0.3180,0.8153,0.8051,0.3094,0.7807,0.2999,0.6552,0.2906,0.2827,0.2657,0.7546,0.2366,0.1562,0.7123,0.1588,0.2778,0.2260,0.1217,0.6307,0.1367,0.1980,0.1434,0.2223,0.1610,0.1224,0.1414,0.1179,0.2182,0.1035,0.4427,0.1251,0.1756,0.1181,0.1610,0.1988,0.9406,0.1410,0.1018,0.4395,0.1827,0.1150,0.1557,0.8950,0.4319,0.8505,0.2099,0.1803,0.1695,0.1479,0.7820,0.2854,0.7733,0.2799,0.2633,0.7589,0.2811,0.1179,0.1509,0.8851,0.2759,0.1143,0.6339,0.1039,0.1271,0.1022,0.1719,0.1204,0.1682,0.1178,0.1643,0.1146,0.1063,0.2181,0.1140,0.1137,0.1594,0.1111,0.1023,0.1045,0.4187,0.2164,0.1115,0.2123,0.1113,0.1170,0.3949,0.3855,0.1345,0.2171,0.2098,0.3839,0.3584,0.1123,0.1814,0.1373,0.3611,0.1592,0.1386,0.1959,0.9453,0.1959,0.9525,0.1814,0.9336,0.7313,0.9147,0.9807,0.8945,0.7988,0.1528,0.6908,0.2044,0.1098,0.1680,0.6872,0.2057,0.2779,0.6740,0.1077,0.1683,0.6746,0.2033,0.2745,0.2969,0.6477,0.1286,0.1651,0.6653,0.1914,0.2739,0.2846,0.5959,0.6544,0.1594,0.2711,0.2435,0.5543,0.3408,0.5866,0.5205,0.3007,0.9288,0.1384,0.1224,0.1215,0.8385,0.4327,0.2385,0.7575,0.4171,0.4009,0.1867,0.6579,0.1843,0.3852,0.2221,0.1209,0.6151,0.1328,0.1902,0.2147,0.2301,0.1078,0.1346,0.2472,0.2026,0.1951,0.2520,0.1434,0.2399,0.1960,0.6793,0.2347,0.1847,0.6832,0.1309,0.1718,0.6727,0.1334,0.1454,0.6516,0.2762,0.1215,0.1577,0.2733,0.1791,0.4938,0.2662,0.1763,0.5759,0.2583,0.2066,0.7641,0.7481,0.2153,0.7317,0.2440,0.7213,0.7167,0.4809,0.1243,0.1896,0.2651,0.6998,0.4983,0.1180,0.1575,0.2760,0.6782,0.4890,0.1109,0.1368,0.3473,0.4795,0.1217,0.1339,0.1643,0.3832,0.1659,0.3415,0.1587,0.1052,0.1543,0.1812,0.1387,0.5573,0.3155,0.2615,0.2656,0.2703,0.1913,0.7957,0.2657,0.1791,0.7527,0.2400,0.1614,0.7068,0.2212,0.1605,0.2191,0.1581,0.1200,0.3871,0.2105,0.3066,0.1195,0.3854,0.6913,0.1165,0.1191,0.1178,0.3811,0.6674,0.1129,0.1158,0.6285,0.3722,0.6525,0.1313,0.1073,0.1614,0.4505,0.3461,0.6380,0.1568,0.1526,0.5833,0.1422,0.1405,0.3510,0.1276,0.4481,0.1304,0.1387,0.3449,0.1248,0.6070,0.4575,0.1410,0.1220,0.3389,0.1208,0.5933,0.4597,0.1101,0.1345,0.2790,0.2063,0.3324,0.5623,0.4558,0.2774,0.1734,0.2615,0.5186,0.2476,0.3057,0.6982,0.5730,0.2348,0.1208,0.2958,0.1380,0.6908,0.5624,0.1735,0.1101,0.2285,0.6761,0.5597,0.1257,0.1011,0.1030,0.4002,0.6533,0.5491,0.1711,0.5536,0.5361,0.1632,0.3078,0.7493,0.5187,0.1165,0.2957,0.7677,0.2843,0.7553,0.2726,0.7414,0.5087,0.3448,0.5013,0.2449,0.2434,0.4904,0.2462,0.2482,0.2574,0.2381,0.4673,0.2940,0.4598,0.4505,0.2224,0.6826,0.5813,0.2175,0.6318,0.5328,0.1534,0.2128,0.5841,0.4901,0.4998,0.3951,0.1023,0.1931,0.4348,0.4013,0.2299,0.1277,0.1818,0.1055,0.4250,0.4196,0.2557,0.1803,0.1251,0.1806,0.1089,0.4113,0.3968,0.2390,0.6623,0.1491,0.1793,0.1008,0.5182,0.6154,0.1242,0.1769,0.4999,0.1894,0.5753,0.1317,0.1776,0.1265,0.1593,0.4923,0.4825,0.1092,0.3666,0.1098,0.1563,0.4796,0.4606,0.1048,0.3335,0.1985,0.4619,0.1951,0.2900,0.5295,0.1392,0.1956,0.2682,0.1891,0.2762,0.4924,0.5103,0.2635,0.1003,0.2748,0.5552,0.5879,0.2690,0.1096,0.2774,0.5409,0.5899,0.5776,0.4868,0.6009,0.1747,0.4658,0.5921,0.3038,0.1689,0.4448,0.5718,0.5595,0.2119,0.1517,0.3646,0.7035,0.6914,0.6794,0.1307,0.6682,0.1300,0.1299,0.1267,0.1676,0.1512,0.1045,0.1011,0.1426,0.1490,0.1471,0.1262,0.1657,0.2557,0.2547,0.3144,0.2642,0.2936,0.2228,0.1255,0.3106,0.5347,0.3187,0.1919,0.1230,0.3070,0.5283,0.3092,0.1118,0.3043,0.5212,0.2998,0.2982,0.5164,0.1012,0.2905,0.6155,0.3579,0.1869,0.3542,0.5035,0.6148,0.1035,0.3194,0.2010,0.6045,0.1439,0.2714,0.3255,0.1151,0.5881,0.4922,0.2897,0.4833,0.5150,0.6670,0.4161,0.1612,0.5076,0.6568,0.5180,0.4948,0.6222,0.5921,0.9620,0.4499,0.5583,0.9304,0.4138,0.8356,0.1450,0.4073,0.7601,0.1030,0.3869,0.4565,0.1090,0.3088,0.4325,0.1081,0.3902,0.1484,0.1720,0.1088,0.1270,0.1309,0.1068,0.1904,0.4310,0.3977,0.2267,0.1556,0.2346,0.1616,0.3881,0.3364,0.1529,0.1572,0.2368,0.1289,0.2423,0.3501,0.1294,0.1520,0.2278,0.5864,0.1401,0.2082,0.2097,0.5994,0.1328,0.3339,0.2695,0.1704,0.5844,0.3198,0.2570,0.1017,0.2663,0.5697,0.1212,0.3063,0.2418,0.1113,0.1989,0.1813,0.9905,0.9941,0.1018,0.9814,0.1063,0.1040,0.9677,0.1266,0.4338,0.1433,0.9290,0.3333,0.1272,0.9080,0.2671,0.8171,0.1877,0.1358,0.1277,0.1422,0.1287,0.2194,0.3765,0.2655,0.1963,0.1102,0.3705,0.2588,0.1904,0.1204,0.3658,0.1826,0.1159,0.1711,0.3281,0.1648,0.1581,0.1507,0.1457,0.2282,0.1603,0.2169,0.2854,0.1418,0.2922,0.2137,0.1045,0.1669,0.2359,0.1249,0.1721,0.1365,0.2952,0.1027,0.1030,0.1371,0.1201,0.1031,0.2215,0.1304,0.3716,0.3082,0.3190,0.3085,0.1992,0.1031,0.1720,0.1143,0.1268,0.3341,0.3355,0.2383,0.2007,0.1645,0.1818,0.1167,0.2700,0.1802,0.1970,0.2006,0.2166,0.1724,0.1936,0.2527,0.1961,0.3066,0.1283,0.3046,0.1506,0.1866,0.1290,0.3034,0.1820,0.1672,0.1797,0.1356,0.1710,0.2740,0.5263,0.1732,0.1381,0.1099,0.1396,0.1214,0.2727,0.5719,0.1646,0.1029,0.1161,0.2145,0.6570,0.1045,0.5497,0.8020,0.1564,0.2141,0.6623,0.1045,0.5236,0.7233,0.6503,0.1027,0.6605,0.2811,0.6302,0.4700,0.1036,0.6040,0.2410,0.1033,0.4468,0.3103,0.1643,0.1873,0.2937,0.2749,0.2328,0.4263,0.1605,0.1593,0.2273,0.2920,0.3944,0.2589,0.1523,0.1572,0.1009,0.2117,0.2644,0.3415,0.1841,0.2065,0.1078,0.6569,0.2264,0.6442,0.2146,0.6311,0.6176,0.1056,0.1470,0.1109,0.1098,0.5138,0.5188,0.1148,0.5018,0.5247,0.4056,0.1142,0.1823,0.2267,0.5136,0.3976,0.1016,0.1060,0.4825,0.2324,0.1090,0.3881,0.1062,0.5890,0.6026,0.5916,0.3863,0.3949,0.1831,0.3904,0.1875,0.3397,0.5427,0.1798,0.1492,0.1842,0.3103,0.5364,0.1869,0.1367,0.1511,0.5257,0.1787,0.1237,0.1597,0.1798,0.4841,0.1721,0.1032,0.1369,0.2400,0.1627,0.1809,0.2982,0.1532,0.2651,0.1458,0.1037,0.1123,0.1418,0.1050,0.1365,0.1405,0.2421,0.1015,0.1374,0.1264,0.2388,0.1093,0.2976,0.1406,0.2574,0.3252,0.2925,0.2527,0.3317,0.9734,0.3264,0.2877,0.9020,0.1112,0.3650,0.2749,0.7819,0.2537,0.1428,0.3588,0.6978,0.1799,0.2911,0.1679,0.1041,0.3467,0.2007,0.1241,0.1513,0.1860,0.1394,0.3706,0.1553,0.1660,0.1366,0.1437,0.2407,0.2221,0.1299,0.9492,0.2231,0.9298,0.5428,0.2453,0.1786,0.2458,0.9450,0.1639,0.6687,0.2411,0.9365,0.1512,0.1018,0.6123,0.9053,0.1258,0.9213,0.1406,0.1039,0.5911,0.8103,0.1246,0.9052,0.5374,0.7207,0.8870,0.4909,0.6362,0.8814,0.4547,0.5756,0.3935,0.4129,0.8674,0.4253,0.5294,0.3542,0.5931,0.3776,0.3047,0.3546,0.3028,0.1323,0.1503,0.5478,0.1225,0.3510,0.2869,0.1174,0.1024,0.1288,0.3504,0.2729,0.3444,0.3949,0.5865,0.1252,0.2607,0.3268,0.3782,0.5618,0.3067,0.3579,0.5257,0.1436,0.5064,0.3405,0.4956,0.4855,0.3249,0.4525,0.5931,0.2840,0.7068,0.6915,0.6740,0.6577,0.6417,0.5846,0.1350,0.2048,0.1342,0.1207,0.1948,0.1264,0.1844,0.5786,0.1512,0.2117,0.5833,0.1419,0.1063,0.1066,0.2216,0.5797,0.1326,0.1352,0.4230,0.1044,0.2162,0.5644,0.3870,0.1191,0.2998,0.2052,0.5499,0.3739,0.1328,0.1697,0.5327,0.3551,0.1810,0.1590,0.1495,0.2009,0.2170,0.3570,0.3533,0.1322,0.3430,0.1310,0.1715,0.1100,0.1540,0.1081,0.2711,0.4392,0.1435,0.2670,0.3901,0.1339,0.2479,0.3726,0.4017,0.1493,0.3907,0.3986,0.1483,0.5381,0.2719,0.3246,0.8099,0.1277,0.3025,0.5340,0.3343,0.2480,0.7823,0.1131,0.2832,0.1935,0.5273,0.3806,0.7460,0.1818,0.3551,0.1262,0.4026,0.5856,0.2305,0.1972,0.1008,0.1917,0.5372,0.2200,0.3814,0.1576,0.5179,0.3555,0.1043,0.2148,0.4291,0.1559,0.1656,0.4715,0.3990,0.3480,0.2475,0.1382,0.1271,0.1984,0.1543,0.4276,0.1536,0.1621,0.4585,0.3974,0.3342,0.2395,0.1325,0.1186,0.1169,0.1811,0.1376,0.4196,0.1509,0.4516,0.2245,0.1127,0.1382,0.1131,0.1437,0.2447,0.2138,0.1631,0.2423,0.6746,0.2388,0.1456,0.8739,0.6601,0.2125,0.1239,0.6239,0.3776,0.2452,0.6452,0.3099,0.2140,0.5207,0.4393,0.2418,0.6307,0.3294,0.2059,0.4508,0.3518,0.6123,0.1506,0.3223,0.1948,0.3631,0.1924,0.1477,0.1988,0.3084,0.3908,0.1858,0.2919,0.1949,0.2424,0.3538,0.1607,0.1896,0.3421,0.2159,0.3042,0.1424,0.1328,0.1087,0.3696,0.1461,0.1511,0.1746,0.3622,0.1405,0.2019,0.1393,0.1592,0.1057,0.1396,0.1693,0.3006,0.2458,0.1060,0.1226,0.1472,0.1134,0.1353,0.2461,0.1947,0.2319,0.2131,0.1040,0.1927,0.1480,0.1840,0.1156,0.1965,0.1083,0.3821,0.3758,0.1277,0.3411,0.1167,0.2786,0.1119,0.1126,0.1157,0.5476,0.1090,0.1073,0.3209,0.3927,0.3702,0.3189,0.3814,0.4087,0.3215,0.2450,0.1305,0.1281,0.3886,0.4006,0.1024,0.2047,0.3054,0.7010,0.3833,0.1003,0.2190,0.8734,0.2074,0.2244,0.4571,0.7147,0.4388,0.2197,0.4561,0.6186,0.2463,0.4303,0.1923,0.4279,0.5528,0.4879,0.1778,0.2389,0.3940,0.1063,0.3996,0.2393,0.3185,0.1061,0.3452,0.2255,0.4107,0.2944,0.3455,0.4783,0.4010,0.3277,0.1907,0.4716,0.3858,0.2851,0.2108,0.4612,0.3957,0.3240,0.1826,0.3341,0.2609,0.4238,0.3925,0.3469,0.3193,0.2377,0.2419,0.3811,0.3858,0.3326,0.2334,0.3465,0.7934,0.3188,0.4823,0.2224,0.3047,0.4629,0.4258,0.3136,0.4837,0.1615,0.2814,0.3223,0.4183,0.3056,0.4715,0.1714,0.1012,0.1087,0.3126,0.1661,0.1053,0.2459,0.7002,0.2815,0.2294,0.4356,0.1011,0.2057,0.2060,0.5793,0.2768,0.2219,0.4247,0.1455,0.1424,0.1634,0.5017,0.1036,0.1442,0.4583,0.1363,0.2831,0.1196,0.1114,0.1010,0.2869,0.3723,0.2337,0.1093,0.2786,0.3461,0.2575,0.1825,0.2731,0.1176,0.7078,0.2684,0.1401,0.6437,0.2616,0.1416,0.3206,0.2548,0.3032,0.5818,0.2199,0.1073,0.1495,0.2845,0.5525,0.1265,0.8465,0.1109,0.1461,0.1459,0.5210,0.6058,0.1010,0.1501,0.1007,0.4457,0.1772,0.2718,0.1071,0.1799,0.2903,0.3005,0.1536,0.1868,0.1532,0.1014,0.1058,0.1676,0.2831,0.2903,0.2035,0.1844,0.1197,0.1630,0.2704,0.1725,0.1776,0.1088,0.1296,0.1623,0.1425,0.5268,0.5754,0.3011,0.3731,0.5416,0.5672,0.2944,0.5318,0.1401,0.5379,0.1191,0.2865,0.7063,0.3668,0.1168,0.7747,0.6014,0.2502,0.7537,0.5946,0.5849,0.7592,0.5729,0.7543,0.7383,0.7197,0.1006,0.2444,0.1284,0.5375,0.1156,0.6637,0.1111,0.6466,0.6590,0.1069,0.6384,0.6484,0.1031,0.6152,0.7059,0.5486,0.7207,0.1161,0.8836,0.9203,0.9815,0.9906,0.9609,0.9534,0.9465,0.9218,0.8428,0.1144,0.8578,0.8416,0.3641,0.7528,0.3667,0.1785,0.3947,0.1251,0.3858,0.9921,0.9860,0.9911,0.9828,0.9675,0.1626,0.9529,0.1257,0.1618,0.8574,0.1110,0.4263,0.1132,0.3079,0.2184,0.1157,0.3618,0.1832,0.3485,0.9069,0.3147,0.9505,0.3384,0.8298,0.1105,0.3724,0.7405,0.3480,0.6566,0.6741,0.2874,0.1559,0.6840,0.5138,0.1838,0.6611,0.2708,0.6331,0.2738,0.1263,0.5912,0.2734,0.1628,0.6915,0.4803,0.1516,0.5218,0.1522,0.1800,0.1950,0.5325,0.5179,0.3769,0.4987,0.3313,0.2101,0.9694,0.1832,0.9918,0.1629,0.9682,0.1982,0.9448,0.1831,0.9237,0.1713,0.8851,0.1624,0.1214,0.1344,0.2428,0.2564,0.2543,0.1931,0.2209,0.2688,0.1887,0.1837,0.1886,0.1099,0.1673,0.1775,0.1668,0.1220,0.1470,0.1944,0.1690,0.1146,0.1796,0.1660,0.1756,0.1617,0.5265,0.1760,0.5139,0.2389,0.5029,0.2639,0.4205,0.4901,0.2497,0.3973,0.4711,0.3471,0.1799,0.6090,0.1073,0.5961,0.1076,0.6331,0.5074,0.7906,0.7709,0.7029 Could you tell me what might went wrong? Thank you very much!!!!

[dincarnato]

Dear sfsdfd62,

this is very vague. The message indicates that for your query there is no significant match returned. What database are you searching into? Do you expect to see matches? What parameter set are you using?

Best, Danny

[sfsdfd62]

Dear dincarnato,

I used the default database and parameter, And I used RNAplfold to get the base-pairing probability. It seems that I should make my own database. But is it OK to use the base-pairing probability generated by RNAplfold to serve as the input? Thank you !!!!!!

Best, sfsdfd62

[dincarnato]

Dear sfsdfd62,

it would be good to understand what are you trying to achieve. Also, please read the SHAPEwarp manual to understand how the program works (https://shapewarp-docs.readthedocs.io/en/latest/) and, if you are searching for unpaired probabilities rather than SHAPE reactivities, I suggest you to look at the materials and methods of the original paper as the suggested parameters where indicated there.

Best, Danny

[dincarnato]

Hi sfsdfd62,

as there is no real problem with SHAPEwarp, I am gonna close this issue. Best,

Danny

[sfsdfd62]

Dear dincarnato. I have read the paper, and I just don't know how to feed the probability into the SHAPEwarp. I noticed that SHAPE reacitivity could be displayed like: AGTGG 0.490,0.327,0.610,1.171,2.621 But the base pairing probability for RNA sequence is always a matrix, which means one nucleotide could have different probabilities with other nucleotides. What could be the input format for probabilities? I didn't see it in the doc or in the methods part. I would appreciated it if you could answer my stupid little question,which have troubled me for months... Best,

sfsdfd62

[dincarnato]

You cannot use the full matrix. SHAPEwarp will only use the probability of bases of being unpaired. You can pass these just like you do for SHAPE reactivities.