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ding-lab / CharGer

Characterization of Germline variants
https://ding-lab.github.io/CharGer/
GNU General Public License v3.0
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clinvarDone always true #21

Closed mmoisse closed 5 years ago

mmoisse commented 5 years ago

Why is clinvar done always true when reading a vcf file?

https://github.com/ding-lab/CharGer/blob/9d0c2c6cebf9db1130502f04fac529123b44f78c/charger/charger.py#L489

rmashl commented 5 years ago

Yes, it appears the default value there should be False for correct reporting of whether the vcf file has clinvar annotation.