ding-lab / CharGer

Characterization of Germline variants
https://ding-lab.github.io/CharGer/
GNU General Public License v3.0
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biomine warning #36

Closed rescuz closed 4 years ago

rescuz commented 4 years ago

Hello, I want to ask the reason about the biomine warning : biomine warning: EX not found in conversion tables biomine warning: ECPIC not found in conversion tables biomine warning: EX not found in conversion tables biomine warning: ECPIC not found in conversion tables biomine warning: EX not found in conversion tables biomine warning: ECPIC not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables biomine warning: RVEEVQNVIN not found in conversion tables

And this is my shell content:charger -f ${in} -o ${out} -D --inheritanceGeneList ${pvs1} -E -l --mac-clinvar-tsv ${clinvar} --PP2GeneList ${pp2} --BP1GeneList ${bp1} -H ${pm5} -g ${mmGenes} -z ${mmVariants} --exac-vcf ${ExAC}; Looking forward to your reply ,thanks

fernanda-rodrigues commented 4 years ago

Hello @rescuz I apologize for the delay in my response. These warnings can be ignored; they do not affect your results :)

Let me know if you need further help!

yubau1112 commented 4 years ago

Will it be modified in the future to remove the warning? Or is there a way to turn it off?

ccwang002 commented 4 years ago

@yubau1112 we are working on an update, but it will take another few months. So the warnings will stay around for a while.