How to get variant peptide

ding-lab / misplice

Discover Mutation Induced Splice Sites

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How to get variant peptide #6

Closed BGIHENG closed 5 years ago

BGIHENG commented 5 years ago

Hi,

I have finished SCM detection using Misplice. Could you tell us how to get variant peptide (8-mer, 9-mer, 10-mer) according the result.

Thanks ~

caosgc33d commented 5 years ago

Generating different length of peptides is not a part of MiSplice pipeline. You can look other neoantigen detection pipeline such as INTEGRATE-neo, or pVACseq, etc.