dingruofan / xQTLbiolinks

xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
GNU General Public License v3.0
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Question about the missing datasets for the annotation function #24

Closed JiaruiMi01 closed 2 months ago

JiaruiMi01 commented 5 months ago

Dear Ruofan and Professor Lei Li,

Another small question, I noticed that the software also implement several modules in annotation, which include: xQTLanno_genomic: https://dingruofan.github.io/xQTLbiolinks/reference/xQTLvisual_anno.html xQTLanno_chippeak: https://dingruofan.github.io/xQTLbiolinks/reference/xQTLanno_chippeak.html xQTLanno_calLambda: https://dingruofan.github.io/xQTLbiolinks/reference/xQTLanno_calLambda.html

However, when I run the demo, I noticed that several files required for the analyses were missing on the websites, which include: http://bioinfo.szbl.ac.cn/xQTL_biolinks/xqtl_data/gwas/gwasSub.txt.gz http://bioinfo.szbl.ac.cn/xQTL_biolinks/xqtl_data/enhancer.txt http://bioinfo.szbl.ac.cn/xQTL_biolinks/xqtl_data/eqtl/MMP7_qtlDF.txt

And in the tutorial, there should be another folder named "eQTL" under the xQTL_biolinks directory.

Would it be possible that you can reorganize the background files on your website?

Thank you very much for your time and attention.

all the best, Jiarui

dingruofan commented 2 months ago

I’ve reorganized the background files on the website, and they should now be accessible