diogomribeiro / sc_cop

Single cell local gene co-expression project

MIT License

0 stars 0 forks source link

Could `CODer.py` suitable for `MAGIC_RNA` data? #1

Closed jiangpuxuan closed 1 year ago

jiangpuxuan commented 1 year ago

Hi Ribeiro! I am using sc_cop for single-cell transcriptome analysis. I wonder if it is suitable to use CODer.py on magicked matrix.

Thank you for your help!

diogomribeiro commented 1 year ago

Hi, CODer.py is not specific for single cell data. Input is a custom BED file where rows are genes and columns are samples, also uses a few initial columns described here:

chr start end gene info strand sample1 sample2

Cheers, Diogo