Dear Desislava,
I would like to ask what the "nSites" parameter will be used for?
Based on the above formula in the instruction Manual(Formula 1 in the "Observed vs fitted dissimilarities" section), I assume that the genetic dissimilarity matrix was already normalised by the number of Sites.
In this case, why you would require an input of nSites in the *.ini files?
My genetic dissimilarity matrix was computed using 3 million common SNPs since it is whole genome low-pass sequencing data. I am a bit afraid that such a large nSites will result in erroneous modelling in the default setting.
Could you please advise?
Dear Desislava, I would like to ask what the "nSites" parameter will be used for?
Based on the above formula in the instruction Manual(Formula 1 in the "Observed vs fitted dissimilarities" section), I assume that the genetic dissimilarity matrix was already normalised by the number of Sites.
In this case, why you would require an input of nSites in the *.ini files?
My genetic dissimilarity matrix was computed using 3 million common SNPs since it is whole genome low-pass sequencing data. I am a bit afraid that such a large nSites will result in erroneous modelling in the default setting.
Could you please advise?